PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462885445

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HSF

Protein Properties

Length: 227aa MW: 24531.6 Da PI: 9.5338

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462885445	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	116.2	2.1e-36	31	123	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+ye+++d+++++++sw ++g +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fkkg k+ll++i+ 462885445 31 FLTKTYELVDDPSTDHIVSWGDDGATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANDFFKKGAKNLLSEIH 118 9**************************************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+ks+ 462885445 119 RRKSS 123 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.6E-59	27	120	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	8.94E-35	28	120	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	5.9E-38	28	120	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	3.7E-21	31	54	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	8.2E-32	31	120	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.7E-21	69	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	70	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.7E-21	82	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MAFLVDGCGG EMAMSSMDIE GSHAKPVPAP FLTKTYELVD DPSTDHIVSW GDDGATFVVW 60 RPPEFARDLL PNYFKHNNFS SFVRQLNTYG FRKIVADRWE FANDFFKKGA KNLLSEIHRR 120 KSSCSHPSPS HQPYHRLFSA PPPPPAGLPR PGRPRRRGLS GDSVGGQPAA AAAQLAAAGG 180 AGAHEEDLQR HHLLPAEPRG AGAAAAVSDL QVGGGARLRH LHSTATR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	2e-24	27	125	17	125	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269\|PubMed:16202242}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462885445

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054148	1e-100	BT054148.1 Zea mays full-length cDNA clone ZM_BFb0133K13 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463264.1	1e-69	heat stress transcription factor B-4b
Swissprot	Q7XHZ0	8e-66	HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBL	A0A453AY13	9e-76	A0A453AY13_AEGTS; Uncharacterized protein
STRING	Pavir.Ib01755.1.p	1e-69	(Panicum virgatum)
STRING	GRMZM2G025685_P01	8e-70	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	1e-57	heat shock transcription factor B4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]