PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462885349

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

FAR1

Protein Properties

Length: 618aa MW: 69552.8 Da PI: 5.1925

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462885349	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.4	1.4e-24	161	247	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFsvrk k+++ + +++i +++++Cskeg +++e+ + +++ +++etrt+Cka+++ + +++g+w+v+++ eHnHel+ 462885349 161 LYCDYGHRMGFSVRKGKQYYFTGTKTIRTKDYYCSKEGMKDDEQLT--EANFNKPETRTNCKAMVRFRVDSEGQWRVIQIIPEHNHELV 247 7***************************************9988..9999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-22	161	247	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence Send to blast
MRLRSPAFDA VRRSPPAAAA ALLSLQPVQL QQSPACPLAA SVRRPRRGLT TVCISAPLAA 60 LMEGTSIAIE IDGEAICLAN VGDNEQEAQE NGEMPQIIYD AGGGEQMAFD TQEQGRKERG 120 EDPAENEEEE RGNNSLIPSR EELTEELRNK IAYSEEEAYR LYCDYGHRMG FSVRKGKQYY 180 FTGTKTIRTK DYYCSKEGMK DDEQLTEANF NKPETRTNCK AMVRFRVDSE GQWRVIQIIP 240 EHNHELVRPE EIHLLRSVRT LSVPKPGVLN AMVNAEIQAM HENLHEHQWL NDLYQQRHKW 300 CTALHKDAFD GGIESLDRSE SSHNILSSIG DESTSLATFV LEFDKLIGSW RENESLEDIQ 360 AMWFVYDLVM KSKSHHHARK LVLDVLENGE KTLESACELK RLHMNPSGKE KDGSRVEKRK 420 KKSAKLEKHS RNVKQVVLPQ PADSVFVDPP NQDQYYAAED IASNSSIGRP FFYQGYPATS 480 ISASQIQGHT NMQSVPQCAS QEYSAYGAVQ PPSQFVYLPV EDDAEGWQQE EHDPFCKSVL 540 TQDAVHVSVG DHSHPEATDM HILCGHFGVL SVEAWLTVTE DSLFMIDCTL SVDLVVTNNC 600 THKQENRPIR IHVGADVA

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence Send to blast

MRLRSPAFDA VRRSPPAAAA ALLSLQPVQL QQSPACPLAA SVRRPRRGLT TVCISAPLAA  60
LMEGTSIAIE IDGEAICLAN VGDNEQEAQE NGEMPQIIYD AGGGEQMAFD TQEQGRKERG  120
EDPAENEEEE RGNNSLIPSR EELTEELRNK IAYSEEEAYR LYCDYGHRMG FSVRKGKQYY  180
FTGTKTIRTK DYYCSKEGMK DDEQLTEANF NKPETRTNCK AMVRFRVDSE GQWRVIQIIP  240
EHNHELVRPE EIHLLRSVRT LSVPKPGVLN AMVNAEIQAM HENLHEHQWL NDLYQQRHKW  300
CTALHKDAFD GGIESLDRSE SSHNILSSIG DESTSLATFV LEFDKLIGSW RENESLEDIQ  360
AMWFVYDLVM KSKSHHHARK LVLDVLENGE KTLESACELK RLHMNPSGKE KDGSRVEKRK  420
KKSAKLEKHS RNVKQVVLPQ PADSVFVDPP NQDQYYAAED IASNSSIGRP FFYQGYPATS  480
ISASQIQGHT NMQSVPQCAS QEYSAYGAVQ PPSQFVYLPV EDDAEGWQQE EHDPFCKSVL  540
TQDAVHVSVG DHSHPEATDM HILCGHFGVL SVEAWLTVTE DSLFMIDCTL SVDLVVTNNC  600
THKQENRPIR IHVGADVA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462885349

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808353.1	1e-131	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1E5WH11	0.0	A0A1E5WH11_9POAL; Uncharacterized protein
STRING	GRMZM2G034868_P01	1e-129	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-14	FAR1-related sequence 5