PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462885283
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 881aa    MW: 96410.7 Da    PI: 7.8333
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462885283genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.35.9e-23238339199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F +   ++ el+v
  462885283 238 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGAEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLRG--DNCELRV 334
                99*****************************7333.34459************************************************43..555679* PP

                EEE-S CS
         B3  95 kvfrk 99 
                +v+r+
  462885283 335 GVRRA 339
                *9985 PP
2Auxin_resp108.66.7e-36364446183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t+++F+v+Y+Pr+s++eFvv+++ + ++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ d d+  Wp+SkWrsLk
   462885283 364 AWHAVNTGTMFTVYYKPRTSPAEFVVPCDGYIESLKRNYSIGMRFKMRFEGEEAPEQRFTGTIVGMVDPDSGGWPESKWRSLK 446
                 89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-41232353IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-39232367IPR015300DNA-binding pseudobarrel domain
CDDcd100172.70E-21236338No hitNo description
PfamPF023625.5E-21238339IPR003340B3 DNA binding domain
SMARTSM010195.5E-23238340IPR003340B3 DNA binding domain
PROSITE profilePS5086311.42238340IPR003340B3 DNA binding domain
PfamPF065071.7E-33364446IPR010525Auxin response factor
PfamPF023093.7E-8813881IPR033389AUX/IAA domain
PROSITE profilePS5174518.489813881IPR000270PB1 domain
SuperFamilySSF542774.91E-9816881No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
HSRERSDVAF LNLPLSLSLC FFSLYPSRAV NFLGEASRGR EGRRASGESE GNSGGGARPG  60
GEFARLRRGS GGRGGEHARG GAADVKIWCP GDVCFGRGWA GGGGGEGDGS AAAAVGRGGG  120
GAPPEDGMYT ELWNLCAGPL VTVPKVGDKV YYFPQGHIEQ VEASTNQVAE QHMQLYNLPW  180
KIPCEVMNVE LKAEPDTDEV YAQLTLLPES KQEENASSVK EMPAVPPAAL ARPRVHSFCK  240
TLTASDTSTH GGFSVLRRHA DECLPPLDMS RQPPTQELVA KDLHGAEWRF RHIFRGQPRR  300
HLLQSGWSVF VSAKRLVAGD AFIFLRGDNC ELRVGVRRAM RQQANVPSSV ISSHSMHLGV  360
LATAWHAVNT GTMFTVYYKP RTSPAEFVVP CDGYIESLKR NYSIGMRFKM RFEGEEAPEQ  420
RFTGTIVGMV DPDSGGWPES KWRSLKVRWD EASSIPRPER VSPWQIEPAV SPPPINPLPV  480
PRTKRLRPNV LSSPPDSSVP TKEAAAKVTA ETQHNALQRA FSTQENATPK GGFVDNDMET  540
AHKSVLLPPG LDGDKNAICA PRKLGSDGWI QMNIPGSYND MMSGYQPPKD VQNSQGFCPI  600
PEQIAPGLSN FWHTVNAHYQ DQQGNHNMFP GLWSMLPPSS GFGLNKQNYP MMQEVGGFPQ  660
RSTHPKFGNG AFTAVPGRGI DQHSPAWFGH MKPSANLEDP QPRVIKPQPL IIAHADGQKS  720
KGNACKLFGI HLDSPAKSEP LKSPSSVGYD GMPQTPVAAE WRRSDTSEID KCSDTPKTPK  780
QLDTPKADSV SEKHLTCPQI SRSVQCKSQG GTRSCKKVHK QGIALGRSVD LTKFSDYKEL  840
ISELDEMFDF NGELKSSNKE WMVVYTDNEG DMMLVGDDPW K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1701114682354Auxin response factor 1
4ldw_A1e-1701114682354Auxin response factor 1
4ldw_B1e-1701114682354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462885283
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684734.10.0auxin response factor 23 isoform X2
SwissprotA2ZET60.0ARFW_ORYSI; Auxin response factor 23
TrEMBLK3ZHD70.0K3ZHD7_SETIT; Auxin response factor
STRINGSi025988m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2