PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462885214
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 319aa    MW: 35440.9 Da    PI: 6.5111
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462885214genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.4e-102361448
                     HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     d+++++G g+W++ ++  g++R++k+c++rw +yl
        462885214  2 DYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 36
                     899******************************97 PP
2Myb_DNA-binding57.92.3e-184287148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++T+eE++ +++++  lG++ W++Ia++++ gRt++++k++w+++l
        462885214 42 RGKFTQEEEQTILKLHSVLGNK-WSAIAKHLP-GRTDNEIKNFWNTHL 87
                     89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.064136IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-17143IPR009057Homeodomain-like
SuperFamilySSF466893.28E-24283IPR009057Homeodomain-like
CDDcd001673.69E-5236No hitNo description
SMARTSM007176.3238IPR001005SANT/Myb domain
PfamPF002496.2E-9236IPR001005SANT/Myb domain
PROSITE profilePS5129428.1723791IPR017930Myb domain
SMARTSM007171.2E-174189IPR001005SANT/Myb domain
PfamPF002493.9E-174287IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-294492IPR009057Homeodomain-like
CDDcd001671.07E-134487No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDYIQKHGHG SWRALPKLAG LNRCGKSCRL RWTNYLRPDI KRGKFTQEEE QTILKLHSVL  60
GNKWSAIAKH LPGRTDNEIK NFWNTHLKKK LIQMGFDPMT HRPRTDFFAA LPQLIALANL  120
RQLVEQRPWD DHTARLQAEA VQAAKIQYLQ GLLQSAASIA TSPSSNSINT IPSDLEQIGL  180
LSPPQMSSLS SLPSPSFLES ISGQDIAAAQ VHDIQMSSSF FEQPISNDAN QNPDYTAKGS  240
VEEYNDTPKT LLMSENSLPP LADFPISNLG DACSTSSCGG SNTQFPSWPE LFDEQFLSDR  300
LGIGVTAPVR NQFTFSIDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2349119105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-2349119105C-Myb DNA-Binding Domain
1msf_C2e-2349119105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462885214
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953959.10.0transcription factor MYB16
SwissprotQ9S9Z21e-85MYB93_ARATH; Transcription factor MYB93
TrEMBLK3YU390.0K3YU39_SETIT; Uncharacterized protein
STRINGSi017785m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.12e-83myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]