PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462885211 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB_related | ||||||||
Protein Properties | Length: 163aa MW: 18402.2 Da PI: 10.1904 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59 | 1.1e-18 | 14 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l d+++++G g ++Ia++++ gRt++++k++w+++l 462885211 14 KGPWTPEEDQKLMDYIQKHGHGswralpKLAAIAKHLP-GRTDNEIKNFWNTHL 66 79********************9999999999******.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.311 | 9 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-17 | 9 | 76 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.7E-26 | 12 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.9E-16 | 13 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-17 | 14 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.20E-17 | 16 | 66 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MGRSPCCDEN GLKKGPWTPE EDQKLMDYIQ KHGHGSWRAL PKLAAIAKHL PGRTDNEIKN 60 FWNTHLKKKL IQMGFDPMTH RPRTDFFAAL PQLIALANLR QLVEQRPWDD HTARLQAEAA 120 QAAKLQYLQG LLQSARHSLS PSFPTAPHYP SPISPINGKV SLL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462885211 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT070045 | 2e-70 | BT070045.1 Zea mays full-length cDNA clone ZM_BFb0376N06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953959.1 | 5e-82 | transcription factor MYB16 | ||||
Swissprot | Q9S9Z2 | 4e-63 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | K3YU39 | 1e-80 | K3YU39_SETIT; Uncharacterized protein | ||||
STRING | Si017785m | 2e-81 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1126 | 37 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 2e-58 | myb domain protein 93 |
Publications ? help Back to Top | |||
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