PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462884889 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 440aa MW: 49188.7 Da PI: 4.2591 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.6 | 6e-50 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtd elv++yLk+k+ gkkl + ++i+ev++yk+ PwdLp k ++++++ ew+fF++rdkky++g+r+nrat +gyWk++gkd++++ +++ 462884889 6 LPPGFRFHPTDVELVSYYLKRKIMGKKLIV-DAISEVELYKFAPWDLPdKsCLRSRDLEWFFFCPRDKKYPNGSRTNRATPNGYWKTSGKDRTIML-NSR 103 79*************************988.89**************96347777888**************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vglkktL+f++g+apkg +tdWvm ey++ 462884889 104 IVGLKKTLIFHEGKAPKGDRTDWVMYEYKM 133 ****************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.24E-61 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.028 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.6E-26 | 7 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 440 aa Download sequence Send to blast |
MAQTSLPPGF RFHPTDVELV SYYLKRKIMG KKLIVDAISE VELYKFAPWD LPDKSCLRSR 60 DLEWFFFCPR DKKYPNGSRT NRATPNGYWK TSGKDRTIML NSRIVGLKKT LIFHEGKAPK 120 GDRTDWVMYE YKMEDDSLVS AGFSKDAYVL CKIFKKSGLG PRIGEQYGAP FNEDEWENAE 180 AQTSMFNLMP SSEVVNPVAD ENDQHDVPAE EPTLQRSSAT FVREESSFDA TAGTCVEDLT 240 FGIVAAPAIQ DGFVSENYVS DEVSNLCSTP EFDGFLLEEL SKFLTDSPLR DDAVGENSGL 300 PPMSESEFQA FQVNTFDLYN ELSGHSGLGG VPNNFVTVAG TMEQNILPAD RQLSTDDFIE 360 LNDLLAPDSS FSCEYPAQNN QFSQYPLAQA TYNVHCNDMA ALSSFEPSSS LQTMPSIFDM 420 FPPASSNGFA TDQRRNHMED |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-53 | 2 | 157 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462884889 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ727977 | 1e-175 | KJ727977.1 Zea mays clone pUT6091 NAC transcription factor (NAC38) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014660428.1 | 0.0 | NAC domain-containing protein 82 | ||||
TrEMBL | A0A368QI29 | 0.0 | A0A368QI29_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J02083.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4731 | 36 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G09330.4 | 2e-83 | NAC domain containing protein 82 |