PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462884854 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 295aa MW: 32227.3 Da PI: 9.8782 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 126.5 | 2.1e-39 | 21 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgel 99 +ppGfrFhPtdeelv++yL+++++g ++++ +i+e+d+yk++Pw+Lp+ ++y r ++ ++g+ + r +++sgyWkatg dk+v s ++ 462884854 21 MPPGFRFHPTDEELVMHYLCRRCAGLPISV-PIIAEIDLYKYDPWQLPS-------KYYRIEWRCTARRNGTSSPRaTARSGYWKATGADKPVGS--PRT 110 79****************************.88***************3.......344455555666678888885667*************99..678 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +kk Lvfy g+apkg kt+W+mheyrl 462884854 111 LAIKKALVFYAGKAPKGDKTNWIMHEYRL 139 9**************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-47 | 15 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.656 | 21 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-21 | 22 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 295 aa Download sequence Send to blast |
MSGRGGRGAA QAQEQARELQ MPPGFRFHPT DEELVMHYLC RRCAGLPISV PIIAEIDLYK 60 YDPWQLPSKY YRIEWRCTAR RNGTSSPRAT ARSGYWKATG ADKPVGSPRT LAIKKALVFY 120 AGKAPKGDKT NWIMHEYRLA DVDRSARKNK GNNSLRLDDW VLCRIYNKKG AHEKPAGGEH 180 GKETSYGEHA DNARSPPEQK PPLLPPGGPG AGKVRPSDSM PRAHAEDSSG GSGHTAEERP 240 EVQSQPKIAE WERTFASAAP GVNPAGSMLG AAAAGRSAGD PLLNDILTYW GNKPF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-58 | 8 | 174 | 2 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses (PubMed:20632034). Transcription activator involved in response to abiotic and biotic stresses. Involved in drought and salt stress responses, and defense response to the rice blast fungus (PubMed:17587305). Transcription activator involved tolerance to cold and salt stresses (PubMed:18273684). Transcription activator involved in tolerance to drought stress. Targets directly and activates genes involved in membrane modification, nicotianamine (NA) biosynthesis, glutathione relocation, accumulation of phosphoadenosine phosphosulfate and glycosylation in roots (PubMed:27892643). Controls root growth at early vegetative stage through chromatin modification and histone lysine deacytaltion by HDAC1 (PubMed:19453457). {ECO:0000269|PubMed:17587305, ECO:0000269|PubMed:18273684, ECO:0000269|PubMed:19453457, ECO:0000269|PubMed:20632034, ECO:0000269|PubMed:27892643}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462884854 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress, cold stress and abscisic acid (ABA) (PubMed:20632034, PubMed:27892643). Induced by methyl jasmonate (PubMed:20632034, PubMed:11332734). Induced by infection with the rice blast fungus Magnaporthe oryzae (PubMed:11332734). {ECO:0000269|PubMed:11332734, ECO:0000269|PubMed:20632034, ECO:0000269|PubMed:27892643}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT037323 | 7e-81 | BT037323.1 Zea mays full-length cDNA clone ZM_BFb0162P01 mRNA, complete cds. | |||
GenBank | KJ727956 | 7e-81 | KJ727956.1 Zea mays clone pUT6054 NAC transcription factor (NAC20) mRNA, partial cds. | |||
GenBank | KM987612 | 7e-81 | KM987612.1 Zea mays NAC protein (SNAC052) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166636.1 | 1e-129 | NAC domain-containing protein 48-like | ||||
Swissprot | Q7F2L3 | 1e-112 | NAC48_ORYSJ; NAC domain-containing protein 48 | ||||
TrEMBL | A0A3B5ZWM2 | 1e-128 | A0A3B5ZWM2_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446K217 | 1e-128 | A0A446K217_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A452Z5J8 | 1e-128 | A0A452Z5J8_AEGTS; Uncharacterized protein | ||||
STRING | GRMZM2G180328_P01 | 1e-124 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3417 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01720.1 | 4e-83 | NAC family protein |