PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462884810
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 196aa    MW: 21263.9 Da    PI: 8.2562
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462884810genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.4e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv +++ +G g+W++ ++  g+ R++k+c++rw +yl
        462884810 14 KGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61
                     79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-24564IPR009057Homeodomain-like
PROSITE profilePS5129423.376965IPR017930Myb domain
SMARTSM007177.6E-141363IPR001005SANT/Myb domain
PfamPF002499.3E-161461IPR001005SANT/Myb domain
SuperFamilySSF466891.8E-221589IPR009057Homeodomain-like
CDDcd001672.71E-121661No hitNo description
PROSITE profilePS500904.3446293IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.8E-96589IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY  60
LRPDLKRGNF TGDEDELIIR LHSLLGNKYP PVTAVPAAKQ FAVESSSSSD AGSSSSGVAS  120
AGEPRCPDLN LDLSVGPPAS ASSDDTPTSR PPVCLCYRLG LRAGEACGCQ DDRARSSGPQ  180
QGFRYFRPLL EQGQYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-161310926122MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462884810
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF3725218e-92EF372521.1 Saccharum officinarum MYB protein mRNA, complete cds.
GenBankHF6794288e-92HF679428.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB22 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568394.12e-78myb-related protein Zm38
RefseqXP_020151216.12e-78myb-related protein 308-like
SwissprotP813933e-62MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A287G8K96e-82A0A287G8K9_HORVV; Uncharacterized protein
TrEMBLQ069446e-82Q06944_HORVU; MybHv5
STRINGMLOC_71041.12e-81(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.19e-59myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]