PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462884101
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Nin-like
Protein Properties Length: 396aa    MW: 43103.5 Da    PI: 5.2552
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462884101genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK871.6e-27174223251
     RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                ek++sle+l++yFs+ +kdAA++Lgvc+T++KriCRq+GI+RWP+R+i++
  462884101 174 EKTVSLEELQQYFSGRMKDAARSLGVCPTTMKRICRQHGISRWPFRQIAK 223
                799*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.052155244IPR003035RWP-RK domain
PfamPF020425.5E-25176223IPR003035RWP-RK domain
SuperFamilySSF542771.57E-18301371No hitNo description
SMARTSM006661.2E-17304395IPR000270PB1 domain
PROSITE profilePS5174517.434304396IPR000270PB1 domain
PfamPF005641.9E-13305374IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2402.4E-22305371No hitNo description
CDDcd064073.28E-32305374No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDAYPLAHHA RFCGLAGCLA VCVEMRRDAN EGGREECVLE FFLPPDCRDG AAQKAAVEAM  60
AGTLAERFGN GDLKAIAICS LQDLAFEVVE DDECVLRPDP TIMADTPELE LDDYGGYERD  120
SEEADEHPAA AVGSADVEEP KTDNGEGEQK EGEDPKPRVG RRRKKKKIGK RKNEKTVSLE  180
ELQQYFSGRM KDAARSLGVC PTTMKRICRQ HGISRWPFRQ IAKANNSLDK VKRIFESVQY  240
SPNPVAASAS QQAPAPATAH HPPAALPCLS SAPGVASSQG SCQEPPPRRN TTIRKPFHAV  300
NAGVVTIKAS YRRDIVRFRV PSSAGVEAVK GEVAKRLNME TDAFDVKYLD DDNEWVLLSC  360
DADFQECLEV VPALSTTSSS SGSGAAQPVV RLMVQE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160166RRRKKKK
2161166RRKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462884101
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823617.11e-174protein NLP3-like
TrEMBLA0A3L6RS291e-173A0A3L6RS29_PANMI; Uncharacterized protein
STRINGPavir.Aa03213.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62692939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.18e-39Nin-like family protein