PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462883901

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 418aa MW: 44110.3 Da PI: 6.9108

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462883901	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.5	0.00028	314	347	16	54
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + ++ L++l+ + +K + a++L +++eYIk L 462883901 314 LGDRVTALQQLVAPF-----GKTDTASVLHETIEYIKFL 347 555666677777776.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.363	298	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-8	308	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.33E-4	308	352	No hit	No description
SuperFamily	SSF47459	2.62E-10	308	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MGDHAEMLHA TPAMYNGGGG AAPHGGWWNT VAVPAATCST ELAGFSTWTS ALAASYDMAA 60 EAGKAKSGAT TASSESPGNN SSVTFQEPTG VADAAGVQQP LASFTDWTHL MNNSGVTLHG 120 FLQDGQHDMS SRTDQQQSHI NAPSLMNPSS NNLALQGHHE QDHGHHHQLL SSLGSELLLS 180 PTSPYGGIQS SLLRSLMEPT VAKPAALPGF QQYDQYQQMG QAPPLQFTND AAFWNPSAGF 240 GVPVAAPAQA SSIRVAKTSP APRAATLALK SAMEGVGESS SIIAKKANSE PAFKKPRLET 300 PSPLPTFKVR KEKLGDRVTA LQQLVAPFGK TDTASVLHET IEYIKFLHDQ VSALSAPYLK 360 NGHQVPHLKS SSPDKSKDSH GEISLKGRGL CLVPISSTFA VASEVPVDFW TPFGANFR

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MGDHAEMLHA TPAMYNGGGG AAPHGGWWNT VAVPAATCST ELAGFSTWTS ALAASYDMAA  60
EAGKAKSGAT TASSESPGNN SSVTFQEPTG VADAAGVQQP LASFTDWTHL MNNSGVTLHG  120
FLQDGQHDMS SRTDQQQSHI NAPSLMNPSS NNLALQGHHE QDHGHHHQLL SSLGSELLLS  180
PTSPYGGIQS SLLRSLMEPT VAKPAALPGF QQYDQYQQMG QAPPLQFTND AAFWNPSAGF  240
GVPVAAPAQA SSIRVAKTSP APRAATLALK SAMEGVGESS SIIAKKANSE PAFKKPRLET  300
PSPLPTFKVR KEKLGDRVTA LQQLVAPFGK TDTASVLHET IEYIKFLHDQ VSALSAPYLK  360
NGHQVPHLKS SSPDKSKDSH GEISLKGRGL CLVPISSTFA VASEVPVDFW TPFGANFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462883901

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822972.1	0.0	transcription factor bHLH112-like
TrEMBL	A0A1E5VU63	0.0	A0A1E5VU63_9POAL; Transcription factor bHLH112
STRING	Si010139m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2216	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	2e-49	bHLH family protein