PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462883736
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 159aa    MW: 18391.4 Da    PI: 10.2449
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462883736genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.6e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv  +   G  +W+++++  g+ R++k+c++rw +yl
        462883736 14 KGPWTAEEDQKLVSFILSNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding315.8e-101081312347
                      -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwqky 47 
                       W++Ia+ ++ gRt++++k++w+++
        462883736 108 LWSKIASQLP-GRTDNEIKNHWNTH 131
                      6*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-20562IPR009057Homeodomain-like
PROSITE profilePS5129420.664965IPR017930Myb domain
SMARTSM007177.5E-121363IPR001005SANT/Myb domain
SuperFamilySSF466898.11E-231465IPR009057Homeodomain-like
PfamPF002491.7E-141461IPR001005SANT/Myb domain
CDDcd001671.45E-81661No hitNo description
Gene3DG3DSA:1.10.10.603.7E-1863137IPR009057Homeodomain-like
SMARTSM007172.9E-566134IPR001005SANT/Myb domain
CDDcd001672.43E-671132No hitNo description
PROSITE profilePS5129411.10382136IPR017930Myb domain
SuperFamilySSF466898.11E-23104133IPR009057Homeodomain-like
PfamPF002491.2E-7108131IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDQKLVSFIL SNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SDDEERLVID LHPPLRNIAF EFENTESILH TARMQLKLWS KIASQLPGRT  120
DNEIKNHWNT HIKKKLKKMG IDPLTHKPLQ PTTNQQQQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24121365108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462883736
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074832e-89AK107483.1 Oryza sativa Japonica Group cDNA clone:002-129-C06, full insert sequence.
GenBankBT0362292e-89BT036229.1 Zea mays full-length cDNA clone ZM_BFb0101M11 mRNA, complete cds.
GenBankFJ9402172e-89FJ940217.1 Oryza sativa Japonica Group clone KCS132B07 Myb related transcription factor mRNA, complete cds.
GenBankJX2359282e-89JX235928.1 Oryza sativa Japonica Group Myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973482.11e-81myb-related protein 315
SwissprotQ9C7U71e-78MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A287RFI08e-81A0A287RFI0_HORVV; Uncharacterized protein
TrEMBLA0A287RFK81e-80A0A287RFK8_HORVV; Uncharacterized protein
TrEMBLK3YIS52e-80K3YIS5_SETIT; Uncharacterized protein
STRINGSi014144m4e-81(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.12e-78myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]