PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462883501 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ARR-B | ||||||||
Protein Properties | Length: 523aa MW: 58712.3 Da PI: 6.1075 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.2 | 3.3e-27 | 185 | 238 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++r++W+ +LH+ Fve+v++L G+ekA+Pk+i+e+m+v+gLt+ehv+SHLQkYRl 462883501 185 RQRIQWSGQLHRLFVEVVHRL-GIEKAVPKKIVEMMNVEGLTREHVASHLQKYRL 238 58*******************.********************************8 PP | |||||||
2 | Response_reg | 83.3 | 7.4e-28 | 12 | 122 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+++ + l+++ l++ +y +v++++++e ale+l++++ +Dl+++D+ mpgmdG++ll+ i e ++p+i+++a+++ e++ + +k G 462883501 12 VLAVDDDHVSLTLIEKQLRRCRY-NVTTVTHAETALEMLRARRdadqFDLVITDVHMPGMDGFKLLELIGLEM-DIPVIMLSANDTLETMMKGIKHG 106 799********************.***************88888889**********************6644.8********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a+ +l+Kp+ e+l + 462883501 107 ARNYLVKPVGLEQLKN 122 *************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 4.9E-116 | 2 | 517 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 3.56E-34 | 9 | 130 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.3E-39 | 9 | 158 | No hit | No description |
SMART | SM00448 | 4.6E-30 | 10 | 124 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.698 | 11 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.4E-24 | 12 | 122 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.31E-28 | 13 | 121 | No hit | No description |
PROSITE profile | PS51294 | 9.163 | 182 | 241 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-27 | 183 | 243 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.87E-18 | 184 | 242 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-23 | 186 | 238 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.7E-6 | 189 | 237 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MDVDGFRAKL HVLAVDDDHV SLTLIEKQLR RCRYNVTTVT HAETALEMLR ARRDADQFDL 60 VITDVHMPGM DGFKLLELIG LEMDIPVIML SANDTLETMM KGIKHGARNY LVKPVGLEQL 120 KNLWIHVVRK NTDDPSNSIN NYSDDDHHQS QSWDSEDENV ANHTSRSSRK KKKEDGTRDN 180 KEAKRQRIQW SGQLHRLFVE VVHRLGIEKA VPKKIVEMMN VEGLTREHVA SHLQKYRLYL 240 KKLSTGTYRS HNSFTDETVW SEGNSINTHA LGTFQDNLEH GRYPPSISFA GSSNSRNPFA 300 RMNSQTHNML PTQSVQVMNQ RNLNTSSNSF ANIRNGSQPL AASMEATYYP YRSYASLCMS 360 DPDPSDGNRR KINRSSRLAA SSVQNYELQN QMAALTRTTS PMVGFIEQVE PFNIGSNTES 420 TVMPNYNSAS GGTSSVIPDL PSIQMYNDVM QSQMLNGGDG SGSLHDHQTA ADQLNCNNES 480 LIGTSSGQNG LSDDLDDIFS DYLNQDVFKN IDAFMDGDCD FSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 9e-21 | 185 | 241 | 1 | 57 | Transcription factor LUX |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 173 | RKKKKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462883501 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18722 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-73 | response regulator 2 |