PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462883332
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YA
Protein Properties Length: 285aa    MW: 31157.1 Da    PI: 9.1143
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462883332genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.11.9e-30120176158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                d+p++VNaKQy++Il+RR +Rak+e+e++l  k+rkpylheSRh hAlrR+RgsgGrF
  462883332 120 DAPIFVNAKQYEGILRRRRARAKAERENRL-VKARKPYLHESRHLHALRRARGSGGRF 176
                68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.4E-34118179IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.538119179IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.2E-27122176IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.4E-22122144IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860124144IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.4E-22153176IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSPEEPCRES RFQVVPGCQA LLEPPVPPPK AVQQEREFPD VMKFSMAAQG KGEKGSDHST  60
TVALQSPFTL YSGRFELGLG QSMVSSKNPY ADQHYGLLSP YGAGAPPGGR MLIPLNMPAD  120
APIFVNAKQY EGILRRRRAR AKAERENRLV KARKPYLHES RHLHALRRAR GSGGRFLNTK  180
KEASGKDAGA RGKTTVSNPL VRQATSPSSE IQQSELGNPS SVSSLSGSEV TSMYDHEDVD  240
HYHSFDHLRT PFFTPLPSVM DGEHGVGNPF KWAVASEGCC DLLNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-17120184266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462883332
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963196.11e-143nuclear transcription factor Y subunit A-10
RefseqXP_022680516.11e-143nuclear transcription factor Y subunit A-10
TrEMBLA0A0A9CZS61e-157A0A0A9CZS6_ARUDO; Uncharacterized protein
STRINGSi022607m1e-143(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.32e-30nuclear factor Y, subunit A10