PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462883251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 245aa MW: 27820.4 Da PI: 8.6435 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.1 | 2.8e-52 | 10 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL+ ++ ++ + ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ 462883251 10 VPPGFRFHPTDEELLYYYLRKKVSFEPIDL-DVIREIDLNKLEPWDLKDrcRIGTGPQdEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFLGnA 108 69****************************.9***************943455444445*************************************9767 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 g+ +gl+ktLvfy+grap+g+ktdW+mheyrl 462883251 109 GRRIGLRKTLVFYTGRAPHGKKTDWIMHEYRL 140 888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-59 | 7 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.666 | 10 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-27 | 11 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MHPSGSPLSV PPGFRFHPTD EELLYYYLRK KVSFEPIDLD VIREIDLNKL EPWDLKDRCR 60 IGTGPQDEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGNAGR RIGLRKTLVF 120 YTGRAPHGKK TDWIMHEYRL DDGDNIEVPP VLEDGWVVCR VFKKKSIQRG FDQQPGMAAA 180 SDDEHQSFHS PVGATQVDQK QGLHYQLMHG GFPAFDPSMH LPQLTSPDSS AGPAFMSGTP 240 PTWRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-51 | 8 | 166 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-51 | 8 | 166 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-51 | 8 | 166 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-51 | 8 | 166 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-51 | 8 | 166 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 4e-51 | 8 | 166 | 15 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462883251 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953045 | 1e-145 | EU953045.1 Zea mays clone 1377565 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827212.1 | 1e-144 | NAC domain-containing protein 76-like | ||||
Swissprot | Q5Z6B6 | 1e-108 | NAC76_ORYSJ; NAC domain-containing protein 76 | ||||
TrEMBL | A0A2S3GN97 | 1e-143 | A0A2S3GN97_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab01037.1.p | 1e-144 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 7e-90 | NAC family protein |
Publications ? help Back to Top | |||
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