PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462882673 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | WRKY | ||||||||
Protein Properties | Length: 185aa MW: 20420.3 Da PI: 10.0844 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.3 | 9.8e-31 | 125 | 183 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ dp ++++tYegeH+h+ 462882673 125 ADDHSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERDPADPAMLIVTYEGEHRHS 183 599***********************9888****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.1E-7 | 74 | 93 | IPR018872 | Zn-cluster domain |
Pfam | PF10533 | 5.9E-9 | 101 | 122 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 5.7E-32 | 113 | 183 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.712 | 119 | 185 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.55E-26 | 122 | 183 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.6E-36 | 124 | 184 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-26 | 126 | 182 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MLTLDLMGGG YGGRAEEQAA AIQEAAAAGL RGMEHLITQL QLSSRAAGET TAPTSAAQPE 60 QVDCREVTDM TVSKKHRVKR TIRVPAISPK VADIPADDHS WRKKHRVKRT IRVPAISPKV 120 ADIPADDHSW RKYGQKPIKG SPYPRGYYKC STVRGCPARK HVERDPADPA MLIVTYEGEH 180 RHSNH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-21 | 112 | 182 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462882673 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039298 | 1e-78 | BT039298.1 Zea mays full-length cDNA clone ZM_BFc0004G13 mRNA, complete cds. | |||
GenBank | BT042579 | 1e-78 | BT042579.1 Zea mays full-length cDNA clone ZM_BFb0345E21 mRNA, complete cds. | |||
GenBank | EU966905 | 1e-78 | EU966905.1 Zea mays clone 298088 WRKY51 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds. | |||
GenBank | EU971702 | 1e-78 | EU971702.1 Zea mays clone 369394 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001142073.1 | 3e-51 | uncharacterized protein LOC100274230 | ||||
Swissprot | Q6IEN1 | 5e-50 | WRK51_ORYSI; WRKY transcription factor WRKY51 | ||||
STRING | OMERI04G19410.1 | 1e-56 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP617 | 38 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.2 | 2e-46 | WRKY DNA-binding protein 11 |