PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462882586

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HSF

Protein Properties

Length: 277aa MW: 31723.9 Da PI: 5.7297

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462882586	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	69.9	5e-22	2	59	37	103
HHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 37 akkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103 a ++Lp++Fkh nfaSFvRQLn+YgF+kv+ ++ weF+h+sF +g+k+ll++ikr++ + 462882586 2 AARLLPRFFKHANFASFVRQLNIYGFRKVNPDR---------WEFAHESFLAGQKHLLKNIKRRRPS 59 5679************************999.........*******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	4.1E-15	1	56	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.6E-20	2	56	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.9E-18	2	56	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.85E-18	3	56	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	9.3E-9	5	17	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	6	30	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.3E-9	18	30	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
LAARLLPRFF KHANFASFVR QLNIYGFRKV NPDRWEFAHE SFLAGQKHLL KNIKRRRPSK 60 HQLESQSRTE SRTVCLGQPE NIREVLSLKR DRASLIAEVT MLRQKYNRCK TVLLAMEERI 120 RDNERKQQLI VAFFAKVLSN PEFVQRLLIN RARNKELCGA AKRQRLTASE EQVADVPQMN 180 GVEAASSAVE AAISEGSSDD SVAGTDVKHE TVPEWNHQII DNICDDVWEE LDAIPGTEVE 240 QEDIATDSFD VEELTGRPCG WVDDCPFLLE PMPFVEY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	2e-13	1	59	54	123	Heat shock factor protein 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	55	LKNIKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462882586

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT069572	6e-35	BT069572.1 Zea mays full-length cDNA clone ZM_BFb0177O03 mRNA, complete cds.
GenBank	HQ858724	6e-35	HQ858724.1 Zea mays clone UT1392 HSF transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644301.1	1e-117	PREDICTED: heat stress transcription factor A-6a
Refseq	XP_015631502.1	1e-116	heat stress transcription factor A-6a
Swissprot	Q657C0	1e-117	HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBL	A0A0D9YAQ5	1e-116	A0A0D9YAQ5_9ORYZ; Uncharacterized protein
STRING	Pavir.Eb02487.1.p	1e-118	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP308	37	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	2e-51	heat shock transcription factor A2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]