PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462882351 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | LSD | ||||||||
Protein Properties | Length: 176aa MW: 18545.7 Da PI: 8.4376 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 44 | 3.6e-14 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YPrGApsV+Ca+C++V 462882351 7 CHGCRNLLLYPRGAPSVCCAVCHAV 31 ************************9 PP | |||||||
2 | zf-LSD1 | 44.2 | 3e-14 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y+r+A+ VRC++CdtV 462882351 46 CGGCQTLLMYTRNATTVRCSCCDTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 50.9 | 2.6e-16 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ 462882351 84 CGQCQTVLMYPYGAPSVKCAICNFI 108 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.3E-13 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 1.0E-4 | 7 | 87 | IPR011031 | Multihaem cytochrome |
Pfam | PF06943 | 1.8E-11 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.8E-13 | 44 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-11 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 9.8E-12 | 81 | 110 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.3E-14 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MQSQIVCHGC RNLLLYPRGA PSVCCAVCHA VTSVPPPGME MARLICGGCQ TLLMYTRNAT 60 TVRCSCCDTV NLVRQVSSIA HVNCGQCQTV LMYPYGAPSV KCAICNFITN VGVTTVRPLP 120 PALPVPSGNS YNVPSTSTPT NQSQNVTVVV ENPMTVDEKG KLVSNVVVGV TTGGKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462882351 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805781.1 | 1e-115 | protein LOL2-like isoform X2 | ||||
Swissprot | Q2QMB3 | 1e-101 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | A0A0A9MMP5 | 1e-115 | A0A0A9MMP5_ARUDO; Uncharacterized protein | ||||
STRING | Sb08g021100.1 | 1e-110 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 8e-57 | lsd one like 1 |
Publications ? help Back to Top | |||
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