PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462882337
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 294aa    MW: 31964.5 Da    PI: 9.5334
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462882337genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.82.2e-4971315128
        NAM   5 frFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102
                frFhP+d+el+++yL +kv gk  ++  +  + +vd++kvePwdLp++++ + +ewyfFs +d+kyatg+r+nrat sgyWkatgkd++v + +g+lvg+
  462882337   7 FRFHPRDDELICDYLGPKVGGKVgFSGRRPpMVDVDLNKVEPWDLPAAASVGPREWYFFSLKDRKYATGQRTNRATVSGYWKATGKDRAVSR-RGALVGM 105
                9********************9986665656***************88888999************************************99.999**** PP

        NAM 103 kktLvfykgrapkgektdWvmheyrl 128
                +ktLvfy+grapkg+kt+Wvmheyr+
  462882337 106 RKTLVFYQGRAPKGRKTEWVMHEYRM 131
                ************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100551.8253156IPR003441NAC domain
PfamPF023654.1E-256131IPR003441NAC domain
SuperFamilySSF1019414.45E-537156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MICAVRFRFH PRDDELICDY LGPKVGGKVG FSGRRPPMVD VDLNKVEPWD LPAAASVGPR  60
EWYFFSLKDR KYATGQRTNR ATVSGYWKAT GKDRAVSRRG ALVGMRKTLV FYQGRAPKGR  120
KTEWVMHEYR MEGHEQPPKS FSAKEEDWVL CRVICKKKSA GGGGATSKPA RGLTTNGHDT  180
ATTTSPPLPA LMDTTLAQLH AAMNTTGAVE QVPCFSSFNN IASNSNTAAA QPCYLPMVTG  240
GNGMSYLDGL PELGSCFDPL NSDKKLLKAV LSQLGGEVDM TAAAAASSTW MNNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-46716024172NAC domain-containing protein 19
3swm_B5e-46716024172NAC domain-containing protein 19
3swm_C5e-46716024172NAC domain-containing protein 19
3swm_D5e-46716024172NAC domain-containing protein 19
3swp_A5e-46716024172NAC domain-containing protein 19
3swp_B5e-46716024172NAC domain-containing protein 19
3swp_C5e-46716024172NAC domain-containing protein 19
3swp_D5e-46716024172NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462882337
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805880.11e-172NAC domain-containing protein 21/22-like
SwissprotQ84TE63e-76NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2S3HFC21e-170A0A2S3HFC2_9POAL; Uncharacterized protein
STRINGSi022747m1e-155(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100223144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.29e-69NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]