PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462882127
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 414aa    MW: 46152.6 Da    PI: 6.3518
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462882127genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.53.4e-25161262199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+ltpsd++++g +++ +++a+e+       ++ +++  +l+ +d++g +W++++i+r++++r++lt+GW+ Fv++++L +gD vvF   + +++el+
  462882127 161 FCKTLTPSDTSTHGGFSVLRRHANEClppldmtQLTPTQ--ELVAKDLHGMEWRFRHIFRGRPRRHLLTSGWSAFVSSKRLVAGDAVVFL--RGENGELR 256
                99****************************987777666..8************************************************..449999** PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+v+r+
  462882127 257 VGVRRA 262
                ***996 PP
2Auxin_resp92.38.3e-31287368183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+h ++t+ +F+v+Y+Pr+s+++F+v+++ +++++k+++s G++f+m+f++ +++e+r++Gt+vg ++ld+  Wp+S Wr Lk
   462882127 287 AWHGINTGHMFTVYYKPRTSPADFIVPYDLYLESVKTNYSTGTKFRMRFDGGEVPEQRFTGTIVGCENLDS-LWPESSWRYLK 368
                 7999******************************************************************9.9*******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.23E-38152289IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.8E-41154275IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-23160261No hitNo description
PROSITE profilePS5086312.365161263IPR003340B3 DNA binding domain
SMARTSM010193.0E-24161263IPR003340B3 DNA binding domain
PfamPF023621.4E-22161262IPR003340B3 DNA binding domain
PfamPF065076.2E-28287368IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
VVTVDCFPPA RLPLPSSFQL PPSASAPDPW QMLAAAMEPS PTPQPASYSG DQLYSALWRA  60
CAGPLATVPR PGDLVFYFLQ GHIEQVEADT NQVVQNQTRL YNLPSKMLCR VLNVELKAEP  120
DTDEVYAQIM LMAEPELEVA AAETASSGSI ATPPRPAVSS FCKTLTPSDT STHGGFSVLR  180
RHANECLPPL DMTQLTPTQE LVAKDLHGME WRFRHIFRGR PRRHLLTSGW SAFVSSKRLV  240
AGDAVVFLRG ENGELRVGVR RAMRQLSNVP SLVISSQSLH LEVLATAWHG INTGHMFTVY  300
YKPRTSPADF IVPYDLYLES VKTNYSTGTK FRMRFDGGEV PEQRFTGTIV GCENLDSLWP  360
ESSWRYLKVR WDEPSSIPRP DRVSPWEIEP DLSSLIDAMA RHNLSDQGLL YMPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1564439910362Auxin response factor 1
4ldw_A1e-1564439910362Auxin response factor 1
4ldw_B1e-1564439910362Auxin response factor 1
4ldy_A1e-1574439910362Auxin response factor 1
4ldy_B1e-1574439910362Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462882127
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971147.10.0auxin response factor 4 isoform X1
SwissprotQ5JK200.0ARFD_ORYSJ; Auxin response factor 4
TrEMBLK3XEZ70.0K3XEZ7_SETIT; Auxin response factor
STRINGSi000340m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-167auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]