PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462881942 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB_related | ||||||||
Protein Properties | Length: 199aa MW: 21812.1 Da PI: 8.7753 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.5 | 3.1e-18 | 21 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++Ed l+v+++++lG++ W++Ia++++ gRt++++k++w+++l 462881942 21 RGNFTPDEDGLIVKLHALLGNK-WSLIAARLP-GRTDNEIKNYWNTHL 66 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-9 | 3 | 27 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.94E-22 | 4 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 28.055 | 16 | 70 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-16 | 20 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 21 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.41E-13 | 23 | 66 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-24 | 28 | 67 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MLCGKSCRLR WINYLRPDLK RGNFTPDEDG LIVKLHALLG NKWSLIAARL PGRTDNEIKN 60 YWNTHLRRKL VNMGIDPVTH RPINDTKTAG GDGNVVAFQP PSPNMVKASA APRCPDLNLD 120 LCISPPSPFL SVEEEEDVKP VVKLQGSGHG GHAGRLCFGC SPLGLNNKGI ASDCSNCSSN 180 NHFLGLRIGM LEFRGLEMK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-20 | 3 | 70 | 38 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-20 | 3 | 70 | 38 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-20 | 3 | 70 | 38 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462881942 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679407 | 3e-88 | HF679407.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB1 protein. | |||
GenBank | JQ255477 | 3e-88 | JQ255477.1 Saccharum hybrid cultivar Co 86032 MYB42 (MYB42) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822035.1 | 1e-81 | myb-related protein Zm38-like | ||||
Swissprot | P20025 | 8e-71 | MYB38_MAIZE; Myb-related protein Zm38 | ||||
TrEMBL | A0A2S3I4H7 | 3e-80 | A0A2S3I4H7_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DAJ9 | 3e-80 | A0A2T7DAJ9_9POAL; Uncharacterized protein | ||||
STRING | Sb07g024890.1 | 4e-78 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-55 | myb domain protein 4 |
Publications ? help Back to Top | |||
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