PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462881447 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 33223.2 Da PI: 9.9671 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.4 | 1e-15 | 30 | 74 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E+ellv+a +G + WktI + +g ++t+ q++s+ qky 462881447 30 REKWTADEHELLVHALLVFGRD-WKTIEQFVG-TKTATQIRSHAQKY 74 789*****************77.*********.*************9 PP | |||||||
2 | Myb_DNA-binding | 47.9 | 3.1e-15 | 140 | 184 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E+e++v+a +G + WktI + +g ++t+ q++s+ qky 462881447 140 REKWTADEQERFVHALLVFGRD-WKTIEQFVG-TKTATQIRSHAQKY 184 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-15 | 24 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.986 | 25 | 79 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-8 | 27 | 82 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-10 | 29 | 77 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.1E-13 | 29 | 77 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.3E-13 | 30 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.11E-8 | 32 | 75 | No hit | No description |
SuperFamily | SSF46689 | 4.64E-15 | 135 | 189 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.102 | 135 | 189 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-7 | 138 | 180 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-10 | 139 | 187 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.3E-15 | 139 | 187 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.7E-12 | 140 | 184 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.68E-8 | 142 | 185 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MVMMAARNTT GAPALGTKKP RKPYTISRPR EKWTADEHEL LVHALLVFGR DWKTIEQFVG 60 TKTATQIRSH AQKYFLKAHK HGLAAALPPP HPRRALLHQE EDTVQQLPLS PDDLRFAEVY 120 RFVGDVFGSG APRPTISRPR EKWTADEQER FVHALLVFGR DWKTIEQFVG TKTATQIRSH 180 AQKYFLKAHK HGLAAALPPP HPRRALLHQE EDTVQQLPLS PDDLRFAEVY RFVGDVFGSG 240 APRPVEVQLQ RLHGMDPVVA ETILLMICVS LRGAGSDVCS GASLPVEAQL QRLPTE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462881447 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808779.1 | 1e-60 | protein REVEILLE 6-like | ||||
TrEMBL | A0A1E5VA87 | 1e-80 | A0A1E5VA87_9POAL; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3642 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.2 | 4e-21 | MYB_related family protein |