PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462880894 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GRAS | ||||||||
Protein Properties | Length: 608aa MW: 69444.4 Da PI: 6.6945 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 254.8 | 3.2e-78 | 250 | 597 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 +lL++cA+av++++++ + ++L++++++as +gd+ qRla++f+++L+arl+++ ++l k l +++ s ++e l+a+k+f v+ + +++ +I 462880894 250 TLLIHCAQAVAAHNHTIVIEMLKKIKHHASATGDARQRLAQCFAKGLEARLLDTRTQLWKLLMTERPS---VKEFLKAYKMFRAVCCFNNITLTFSIMTI 346 68*********************************************************999998888...9**************************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202 ++a+ g++r+Hi+ +++ +G+QW+ +++ La+R+ ++++ee g+ L+k A+++g+pf+f+ +++++e++++++L+++ +E+l 462880894 347 MDAIVGKRRLHIVVYGMHYGFQWAIFIRWLAERN------------------AQKIEEQGRWLSKCANKFGLPFKFHS-ITTDWEKVSIKDLHIEVDEVL 427 ********************************94..................4578999*******************.6999***************** PP GRAS 203 aVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 +Vn ++ ++l des ++ +rd+vL+ +++++P+v++ + ++++ ++sFl rf eal +y+alfd+++a++prese r ++E+ +lgr++ n++ac 462880894 428 IVNDLFNFMSLRDESIFFDKpsPRDTVLNNIRKMRPDVFIQSVVNCSY-GSSFLSRFREALFHYTALFDMFDATMPRESESRLVLEQGWLGRHVLNIIAC 526 ***************97776669*************************.679************************************************ PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ega+ + r e++++W++r ++aGF+++pl+ +a ++ ++++k d +++ e+ ++l++gW++r+L++ SaW 462880894 527 EGADLVDRPEKYRQWHARNQRAGFRQLPLNPGIARVIRDKVKMHK-D-FMLSEDGQWLLQGWMGRTLFAHSAW 597 ********************************************9.5.************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.587 | 222 | 580 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-75 | 250 | 597 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MATTPEEFFA QGLIEPTPPS PSVFLDLPVT PDGNTEGSLY PDDMVPSSIF HMLTEDDISN 60 GKLLQQSSDD PTLLQAQQPV VQILSSHSFA ANNDNSCNTE GAEELTTGDG GDQSSLSSSF 120 SNGVDVVGAF FKGTEDAIKF LPRDNSFRSD DQVKEKIFIE SMNHKATKKR YNRGDYLEED 180 VRSTRKAMMT MMEEQEENGS HEILEEMMLC GYETCTKEME NMRISLNNDG KKNKLKSCSK 240 AAKDVVDLPT LLIHCAQAVA AHNHTIVIEM LKKIKHHASA TGDARQRLAQ CFAKGLEARL 300 LDTRTQLWKL LMTERPSVKE FLKAYKMFRA VCCFNNITLT FSIMTIMDAI VGKRRLHIVV 360 YGMHYGFQWA IFIRWLAERN AQKIEEQGRW LSKCANKFGL PFKFHSITTD WEKVSIKDLH 420 IEVDEVLIVN DLFNFMSLRD ESIFFDKPSP RDTVLNNIRK MRPDVFIQSV VNCSYGSSFL 480 SRFREALFHY TALFDMFDAT MPRESESRLV LEQGWLGRHV LNIIACEGAD LVDRPEKYRQ 540 WHARNQRAGF RQLPLNPGIA RVIRDKVKMH KDFMLSEDGQ WLLQGWMGRT LFAHSAWVAA 600 EVPERKRT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-27 | 254 | 598 | 24 | 378 | Protein SCARECROW |
5b3h_D | 1e-27 | 254 | 598 | 24 | 378 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462880894 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791279.1 | 0.0 | scarecrow-like protein 33 | ||||
TrEMBL | A0A3L6Q265 | 0.0 | A0A3L6Q265_PANMI; GRAS transcription factor | ||||
STRING | Pavir.Hb00039.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29065.1 | 1e-104 | GRAS family protein |