PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462880864
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 189aa    MW: 21040.5 Da    PI: 9.497
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462880864genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-144892347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE+ l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
        462880864 48 PWTEEEHRLFLLGLKKYGKGDWRNISRNFVHTRTPTQVASHAQKY 92
                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.534197IPR017930Myb domain
SuperFamilySSF466892.77E-184297IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-174495IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.609.9E-134591IPR009057Homeodomain-like
SMARTSM007172.9E-134595IPR001005SANT/Myb domain
PfamPF002491.5E-124892IPR001005SANT/Myb domain
CDDcd001673.07E-124893No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MMRNAYMEWD DNGGHGAGDF RHGYRFAGGC GKRHPGRTPE QERKKGVPWT EEEHRLFLLG  60
LKKYGKGDWR NISRNFVHTR TPTQVASHAQ KYFIRLNSGG KDKRRSSIHD ITTNNLNDDQ  120
PPSPSQSSLI TNQSNTSAPT AAVAFAILSL LPLFGPVLSL VEKGNHRYEA DPCDNSIQNP  180
NASSFCGCL
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462880864
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5347052e-86EF534705.1 Aeluropus littoralis MYB_Al protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455217.21e-86transcription factor DIVARICATA
RefseqXP_021312949.11e-86transcription factor DIVARICATA
SwissprotQ8S9H71e-51DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A3L6R3P93e-87A0A3L6R3P9_PANMI; Transcription factor DIVARICATA
STRINGSi002426m3e-81(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78863348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.13e-40Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]