PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462880771

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

FAR1

Protein Properties

Length: 902aa MW: 101506 Da PI: 6.8697

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462880771	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86	5.8e-27	115	202	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++vGF vr+s+ ++++n it+rtfvCs+eg+re++k + ++++ +r+etr+gC a+++++++ +gk+++t++ +HnH+la 462880771 115 EFYNAYAEKVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KEAKCPRPETRIGCPASMTIRLTANGKYRLTEFIPNHNHQLA 202 6******************97766.************9999.999***********************************97 PP
2	FAR1	84	2.4e-26	244	330	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA ++GFsvrk++++ + ++ it+r fvCskeg+re+++ + ++ +++r+etrtgC a++++++ +gk++vt++++ HnH+l 462880771 244 EFYSMYAGKIGFSVRKASMTVN-AENVITRRMFVCSKEGFREKKRGA-KRVQKPRPETRTGCPACMVIRLAANGKYHVTEFVTFHNHQL 330 6**************99998.5566************9998.999**********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-24	115	202	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	7.3E-23	244	330	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.0E-23	447	540	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.67	715	762	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.3E-7	732	760	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.8E-6	737	764	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence Send to blast
MPSGSENDPQ FTPGSVAAPS LVQTFRPAHA TGGAAADPRL SQQSWPGHVA LLRPCAPWPP 60 HAPVPLMLNT GNPPKNGDAG ADVAAADVNP AIDSCDENML PKINMLFDGE NDAYEFYNAY 120 AEKVGFFVRR STLWTTSKNI ITRRTFVCSR EGFREKKKGA KEAKCPRPET RIGCPASMTI 180 RLTANGKYRL TEFIPNHNHQ LATTSTINML KAKKIRRKAR AVREHLVDDT VRTPEFENED 240 EAYEFYSMYA GKIGFSVRKA SMTVNAENVI TRRMFVCSKE GFREKKRGAK RVQKPRPETR 300 TGCPACMVIR LAANGKYHVT EFVTFHNHQL GAAAASDLVL ASQSAENDQD DGVDLLDGSP 360 DDSIHKQNCI NEKATGYTPE GRSCKRSKCT KTPHHGDIGA ALEYLQNMQH NSPSFFYAVK 420 SDEDGNFMNF FWADSKSLID FSHFGDVVCL DSGYALQGYG RPLALFTGLN HHKQTVIFGT 480 ALLYDESTEA FRWLLDTFKM AMNRMHPKTL LTDRSTAISE AVTAIWPATA HRYCVWQIYQ 540 SALQNLSQAF HGSRTLECDF KRCLFDYEDE DEFLTEWKEM LEKYDLEDNQ WLADLFSVKE 600 KWALPYGREA IYADMKSAQQ KESLTTELKK HLSLDYDLLH FFEQFERLLC DRRSAELEAD 660 VNANQGTKKP PPMRILRQAA NVYTPAAFKM FEREFELYMD CLLYSCGEVG TISEYRVCVE 720 DNPKGHIVKF DSINATVNCS CKTFEFMGIP CRHMLKVLDN RNIKDLPTQY ILKRWRKDAK 780 SGSRNGNYAF SFEGDPESAQ AKCYNSLCRT FSIAAARAAT CMESFAYMEN QSSILMDQIE 840 QVIQTRPPDI SAFMSANCDQ TENSVDNIVT GGIHSHANFI NGSADGSLTF PFTLGAGALD 900 FR

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence Send to blast

MPSGSENDPQ FTPGSVAAPS LVQTFRPAHA TGGAAADPRL SQQSWPGHVA LLRPCAPWPP  60
HAPVPLMLNT GNPPKNGDAG ADVAAADVNP AIDSCDENML PKINMLFDGE NDAYEFYNAY  120
AEKVGFFVRR STLWTTSKNI ITRRTFVCSR EGFREKKKGA KEAKCPRPET RIGCPASMTI  180
RLTANGKYRL TEFIPNHNHQ LATTSTINML KAKKIRRKAR AVREHLVDDT VRTPEFENED  240
EAYEFYSMYA GKIGFSVRKA SMTVNAENVI TRRMFVCSKE GFREKKRGAK RVQKPRPETR  300
TGCPACMVIR LAANGKYHVT EFVTFHNHQL GAAAASDLVL ASQSAENDQD DGVDLLDGSP  360
DDSIHKQNCI NEKATGYTPE GRSCKRSKCT KTPHHGDIGA ALEYLQNMQH NSPSFFYAVK  420
SDEDGNFMNF FWADSKSLID FSHFGDVVCL DSGYALQGYG RPLALFTGLN HHKQTVIFGT  480
ALLYDESTEA FRWLLDTFKM AMNRMHPKTL LTDRSTAISE AVTAIWPATA HRYCVWQIYQ  540
SALQNLSQAF HGSRTLECDF KRCLFDYEDE DEFLTEWKEM LEKYDLEDNQ WLADLFSVKE  600
KWALPYGREA IYADMKSAQQ KESLTTELKK HLSLDYDLLH FFEQFERLLC DRRSAELEAD  660
VNANQGTKKP PPMRILRQAA NVYTPAAFKM FEREFELYMD CLLYSCGEVG TISEYRVCVE  720
DNPKGHIVKF DSINATVNCS CKTFEFMGIP CRHMLKVLDN RNIKDLPTQY ILKRWRKDAK  780
SGSRNGNYAF SFEGDPESAQ AKCYNSLCRT FSIAAARAAT CMESFAYMEN QSSILMDQIE  840
QVIQTRPPDI SAFMSANCDQ TENSVDNIVT GGIHSHANFI NGSADGSLTF PFTLGAGALD  900
FR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462880771

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800025.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025800026.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025800027.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0A9SDT0	0.0	A0A0A9SDT0_ARUDO; Uncharacterized protein
STRING	Pavir.Bb03075.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-105	FAR1-related sequence 5