PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462880470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | CPP | ||||||||
Protein Properties | Length: 509aa MW: 55905.8 Da PI: 7.8685 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 27.2 | 8.1e-09 | 33 | 59 | 14 | 41 |
TCR 14 lkkYCeCfaagkkCseeCkCedCkNkee 41 l++YCeCfa+g++C+ C+C++C+N+ + 462880470 33 LQMYCECFASGAYCDG-CNCTNCFNNPD 59 689*************.********986 PP | |||||||
2 | TCR | 40.1 | 7.5e-13 | 104 | 135 | 1 | 32 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCk 32 k++kgC+Ckks ClkkYCeCf+a+ Cs++C+ 462880470 104 KHNKGCHCKKSGCLKKYCECFQANILCSDNCN 135 589**************************997 PP | |||||||
3 | TCR | 52 | 1.4e-16 | 141 | 180 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e 462880470 141 RHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 180 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 30.466 | 23 | 181 | IPR005172 | CRC domain |
SMART | SM01114 | 0.002 | 33 | 60 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.0E-5 | 33 | 57 | IPR005172 | CRC domain |
SMART | SM01114 | 6.4E-11 | 104 | 139 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.5E-9 | 107 | 135 | IPR005172 | CRC domain |
SMART | SM01114 | 5.7E-20 | 141 | 182 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 9.5E-13 | 144 | 179 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MSEETRVASV AGKALRRERW HPNEEEMLQL QELQMYCECF ASGAYCDGCN CTNCFNNPDN 60 DAARREAIDA TLERNPDAFR PKIGSSPHAN RNNEASGDLP LVGKHNKGCH CKKSGCLKKY 120 CECFQANILC SDNCNTPLQI RHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCMDCKNFE 180 GSEERKALFQ GDHKNAIHMQ QAANAAVNGA IGVTGFPSPS TSRKRKHIDP SVDHSVKEHV 240 ANRNYHLPQK NAVTDGSLPT NQSVHPPTLG PFKVTYRPLL ADIVQAEDIK ELCKLLVVVS 300 GEAAKAHAGQ KTQEEKAAKK EDDRAGCQTS TNHDRIENIP DRGQKTSISG RTSGGTHTDK 360 ALEEESRHNC ADDKKSDRPM SPGTLALMCD EQDTMFTTSQ NAGSQETVAI NQNRSALYAE 420 QERCVLTEFR DCLRKLVTCG RMKEERYSMG IKSEASGHLG QVNGVSRVPY SKVAVPAVVK 480 TFPQSSSSQP VAGNPVTGPL DKNLKPDNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 8e-21 | 33 | 190 | 22 | 132 | Protein lin-54 homolog |
5fd3_B | 8e-21 | 33 | 190 | 22 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462880470 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815944.1 | 0.0 | LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A2T8IK13 | 0.0 | A0A2T8IK13_9POAL; Uncharacterized protein | ||||
STRING | Si000730m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4730 | 36 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 4e-99 | Tesmin/TSO1-like CXC domain-containing protein |