PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462880356

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GRAS

Protein Properties

Length: 553aa MW: 62371.9 Da PI: 5.2338

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462880356	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	258.8	1.9e-79	294	549	120	374
GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldes 217 s+ QWp+L++ L++R++gpp lRiTg++ p++g +e++eetg+rLa++A++++vpfe++ +a+++e++++++L+v+++E+++Vn+ ++ +l de+ 462880356 294 SKNSQWPCLIRRLSKREGGPPVLRITGIDVPQPGfrPTERIEETGQRLAEYARKFDVPFEYQG-IASKWETIRVDDLKVSKDEVVIVNCLYRFRNLIDET 392 5668***************************9*************************.7******************************* PP GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317 v+++s+r++vL+++++++P ++++ + +++ + F +rf eal ++salfd+le+++pr++ +r+ +Er l+gre+ nv+aceg++r+er et+++W+ 462880356 393 VAVDSPRNRVLNTIRQINPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDMLETTVPRDDPQRALIERDLFGREALNVIACEGSDRVERPETYKQWQV 492 ************************************************************************************************ PP GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r +aGF ++pl+++++++ak ++ ++ + + ++e+sg+l++gWk+r ++++S W+ 462880356 493 RNLRAGFAQAPLNHEIVMKAKDKVKDIYHKDFVIDEDSGWLLQGWKGRIIYAISTWK 549 ************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.577	132	529	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.7E-77	294	549	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence Send to blast
MTSAGSSSGV AGGGSSTWVA NGAVAISSMS DYLRFLDSQQ HMAPEPSSNS SSSMSRTNIE 60 TDNSEDWEFI SDESLNYISR MLEEDIDEKV SMYQAESSAL HATAKPFYDI LGHKFPPSPD 120 HQPIPWSLQS PTESGSSNHA QSLTSTFTPS SIGSAVDSNQ RYSEQLETYR GLHGQSSQPL 180 ISPSSDSCNS VGVLEDPLIT NGRIPEYLFE SLPTWDFRRG VEEAQKFLPG SDKLVIDLEA 240 VSVARPQETW KDISFGARKA EVLNSKKNRQ SEDLDLLEEK KATVLREMMR SEASKNSQWP 300 CLIRRLSKRE GGPPVLRITG IDVPQPGFRP TERIEETGQR LAEYARKFDV PFEYQGIASK 360 WETIRVDDLK VSKDEVVIVN CLYRFRNLID ETVAVDSPRN RVLNTIRQIN PAIFIHGIVN 420 GSYSVPFFIT RFREALFHFS ALFDMLETTV PRDDPQRALI ERDLFGREAL NVIACEGSDR 480 VERPETYKQW QVRNLRAGFA QAPLNHEIVM KAKDKVKDIY HKDFVIDEDS GWLLQGWKGR 540 IIYAISTWKP NKN

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence Send to blast

MTSAGSSSGV AGGGSSTWVA NGAVAISSMS DYLRFLDSQQ HMAPEPSSNS SSSMSRTNIE  60
TDNSEDWEFI SDESLNYISR MLEEDIDEKV SMYQAESSAL HATAKPFYDI LGHKFPPSPD  120
HQPIPWSLQS PTESGSSNHA QSLTSTFTPS SIGSAVDSNQ RYSEQLETYR GLHGQSSQPL  180
ISPSSDSCNS VGVLEDPLIT NGRIPEYLFE SLPTWDFRRG VEEAQKFLPG SDKLVIDLEA  240
VSVARPQETW KDISFGARKA EVLNSKKNRQ SEDLDLLEEK KATVLREMMR SEASKNSQWP  300
CLIRRLSKRE GGPPVLRITG IDVPQPGFRP TERIEETGQR LAEYARKFDV PFEYQGIASK  360
WETIRVDDLK VSKDEVVIVN CLYRFRNLID ETVAVDSPRN RVLNTIRQIN PAIFIHGIVN  420
GSYSVPFFIT RFREALFHFS ALFDMLETTV PRDDPQRALI ERDLFGREAL NVIACEGSDR  480
VERPETYKQW QVRNLRAGFA QAPLNHEIVM KAKDKVKDIY HKDFVIDEDS GWLLQGWKGR  540
IIYAISTWKP NKN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-26	298	549	123	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462880356

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT037562	0.0	BT037562.1 Zea mays full-length cDNA clone ZM_BFb0179L06 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984720.1	1e-178	scarecrow-like protein 9
Refseq	XP_004984721.1	1e-178	scarecrow-like protein 9
TrEMBL	K4A6B3	1e-176	K4A6B3_SETIT; Uncharacterized protein
STRING	Si034418m	1e-177	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-113	GRAS family protein