PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462880356 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GRAS | ||||||||
Protein Properties | Length: 553aa MW: 62371.9 Da PI: 5.2338 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 258.8 | 1.9e-79 | 294 | 549 | 120 | 374 |
GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldes 217 s+ QWp+L++ L++R++gpp lRiTg++ p++g +e++eetg+rLa++A++++vpfe++ +a+++e++++++L+v+++E+++Vn+ ++ +l de+ 462880356 294 SKNSQWPCLIRRLSKREGGPPVLRITGIDVPQPGfrPTERIEETGQRLAEYARKFDVPFEYQG-IASKWETIRVDDLKVSKDEVVIVNCLYRFRNLIDET 392 5668*****************************9*****************************.7*********************************** PP GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317 v+++s+r++vL+++++++P ++++ + +++ + F +rf eal ++salfd+le+++pr++ +r+ +Er l+gre+ nv+aceg++r+er et+++W+ 462880356 393 VAVDSPRNRVLNTIRQINPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDMLETTVPRDDPQRALIERDLFGREALNVIACEGSDRVERPETYKQWQV 492 **************************************************************************************************** PP GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r +aGF ++pl+++++++ak ++ ++ + + ++e+sg+l++gWk+r ++++S W+ 462880356 493 RNLRAGFAQAPLNHEIVMKAKDKVKDIYHKDFVIDEDSGWLLQGWKGRIIYAISTWK 549 ****************************888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.577 | 132 | 529 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.7E-77 | 294 | 549 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
MTSAGSSSGV AGGGSSTWVA NGAVAISSMS DYLRFLDSQQ HMAPEPSSNS SSSMSRTNIE 60 TDNSEDWEFI SDESLNYISR MLEEDIDEKV SMYQAESSAL HATAKPFYDI LGHKFPPSPD 120 HQPIPWSLQS PTESGSSNHA QSLTSTFTPS SIGSAVDSNQ RYSEQLETYR GLHGQSSQPL 180 ISPSSDSCNS VGVLEDPLIT NGRIPEYLFE SLPTWDFRRG VEEAQKFLPG SDKLVIDLEA 240 VSVARPQETW KDISFGARKA EVLNSKKNRQ SEDLDLLEEK KATVLREMMR SEASKNSQWP 300 CLIRRLSKRE GGPPVLRITG IDVPQPGFRP TERIEETGQR LAEYARKFDV PFEYQGIASK 360 WETIRVDDLK VSKDEVVIVN CLYRFRNLID ETVAVDSPRN RVLNTIRQIN PAIFIHGIVN 420 GSYSVPFFIT RFREALFHFS ALFDMLETTV PRDDPQRALI ERDLFGREAL NVIACEGSDR 480 VERPETYKQW QVRNLRAGFA QAPLNHEIVM KAKDKVKDIY HKDFVIDEDS GWLLQGWKGR 540 IIYAISTWKP NKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-26 | 298 | 549 | 123 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462880356 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037562 | 0.0 | BT037562.1 Zea mays full-length cDNA clone ZM_BFb0179L06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984720.1 | 1e-178 | scarecrow-like protein 9 | ||||
Refseq | XP_004984721.1 | 1e-178 | scarecrow-like protein 9 | ||||
TrEMBL | K4A6B3 | 1e-176 | K4A6B3_SETIT; Uncharacterized protein | ||||
STRING | Si034418m | 1e-177 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-113 | GRAS family protein |