PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462880287
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 208aa    MW: 23696.8 Da    PI: 7.1662
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462880287genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.12.3e-194087148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd llv++++++G g+W++ ar  g++Rt+k+c++rw++yl
        462880287 40 RGPWTVEEDVLLVNYIAKHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 87
                     89********************************************97 PP

2Myb_DNA-binding50.16.5e-1693136146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+ E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
        462880287  93 RGNITAAEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 136
                      7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.6913591IPR017930Myb domain
SuperFamilySSF466891.37E-3137134IPR009057Homeodomain-like
SMARTSM007174.7E-163989IPR001005SANT/Myb domain
PfamPF002491.4E-174087IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-234194IPR009057Homeodomain-like
CDDcd001671.35E-124287No hitNo description
PROSITE profilePS5129418.25292142IPR017930Myb domain
SMARTSM007173.2E-1492140IPR001005SANT/Myb domain
PfamPF002491.3E-1493136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-2395141IPR009057Homeodomain-like
CDDcd001677.55E-1197136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MDVTAGGMGF DNLEEMLGTV SPAGSAVSAA GSEDEADLRR GPWTVEEDVL LVNYIAKHGE  60
GRWNSLARSA GLKRTGKSCR LRWLNYLRPD VRRGNITAAE QLLILELHSR WGNRWSKIAQ  120
HLPGRTDNEI KNYWRTRVQK HAKQLRCDVN SRQFRDVVRC IWMPRLLLAA TGRDDDSSMI  180
GLPDFEQLGE FEDNLWSLED LCLHHHCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-263714024126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462880287
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5872671e-116EF587267.1 Triticum aestivum R2R3 Myb-like protein (PIMP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806553.12e-92transcription factor MYB2-like
SwissprotQ10MB46e-86MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A2S3H7R26e-91A0A2S3H7R2_9POAL; Uncharacterized protein
STRINGPavir.J03771.1.p3e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-79myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]