PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462880182 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ARF | ||||||||
Protein Properties | Length: 1011aa MW: 111881 Da PI: 6.4006 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.1 | 1.7e-23 | 144 | 245 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k lt sd++++g +++p++ ae+ ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F ++++ +l+v 462880182 144 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldfSMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI--RDEKSQLLV 240 89*********************999*****9555555.49************************************************..4577778** PP EEE-S CS B3 95 kvfrk 99 +v+r+ 462880182 241 GVRRA 245 **996 PP | |||||||
2 | Auxin_resp | 114.2 | 1.2e-37 | 270 | 352 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaas++ F+++YnPr+s+s Fv+++++++ka++++ svGmRf m+fete+ss+rr++Gt+vg+sd+dp+rWpnSkWr+L+ 462880182 270 AAHAASSGGSFTIYYNPRTSPSPFVIPLARYNKATYMQPSVGMRFAMMFETEESSKRRCTGTIVGISDYDPIRWPNSKWRNLQ 352 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-44 | 134 | 273 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-40 | 137 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.49E-21 | 143 | 244 | No hit | No description |
PROSITE profile | PS50863 | 12.52 | 144 | 246 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.4E-23 | 144 | 246 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-21 | 144 | 245 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.9E-33 | 270 | 352 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.0E-9 | 861 | 995 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 21.89 | 908 | 992 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.75E-8 | 927 | 987 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1011 aa Download sequence Send to blast |
MASSLEKATS GVLRNAAALL DEMQLMGEAQ GSKKVMINSE LWHACAGPLV SLPQRGSLVY 60 YFPQGHSEQV AATTKKTPNS RIPNYPSLSS QLLCQVHNIT LHADKETDEI YAQMTLQPVH 120 SETDVFPIPT LGAYTKSKHP TEYFCKNLTA SDTSTHGGFS VPRRAAEKLF PQLDFSMQPP 180 NQELIVRDLH DNMWTFRHIY RGQPKRHLLT TGWSLFVGAK RLKAGDSVLF IRDEKSQLLV 240 GVRRAIRQQP ALSSSVLSTD SMHLGVLAAA AHAASSGGSF TIYYNPRTSP SPFVIPLARY 300 NKATYMQPSV GMRFAMMFET EESSKRRCTG TIVGISDYDP IRWPNSKWRN LQVEWDEHGY 360 GERPERVSIW DIETPENTLV FSSPSLNSKR QCLPSYGGVL RIMWKAELIS FGFLPFAVPG 420 LQVGPANMSL MPRATGHLYG NLQHMPTIGS ELALMLLNQS GQNLGNPLNC HQSSFSSIIQ 480 NVKHGYIPPS TFGTSIGSIK QEARPSNQTQ QQLSTPNIQR SDQESYDVQP GIDSISAQEL 540 NVAREQRNAD SYSSQSISGQ NSKGEHRNKT RRSKKGQSRK TISDKSELSS VPSQICDDQQ 600 NDSEAKLEAE HANCGNNEDS SGTLTKGNFA GDLQVQHVEQ HELMSAPKLE SSKSPDEGKS 660 VSSFPNQGCF SQFFEGLDWM TQSSYYQDSN GIQSVSTSEN IFDPSADMPS TINGDNMEAF 720 QNSCLSECFP SSIQEFVSTP ELNSLTFLSP EMQHLDVQHD GSNLPSTSNS YVQMSFSEES 780 GNQSASLSGL HMEAIHISNT SCSHPMTTEG FDAGMFSKLP NLKESQVLPL QEIHSSSMGT 840 PSCSMDVAEY SIDRSVKPMK PPVRTYTKVQ CRAVQNESSV KILLILNVQK VGSVGIWTVR 900 NETSVKILLI LNVQKVGSVG RSIDVTRFRD YHELRSAIAS MFGLQGKLEH PGSSDWKLVY 960 VDYENDVLLV GDDPWEEFIN CVRCIRILSP SEVQQMSENG VHVLNDCIQI A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 17 | 375 | 31 | 390 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462880182 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012699862.1 | 0.0 | auxin response factor 11 isoform X1 | ||||
Swissprot | Q01K26 | 0.0 | ARFK_ORYSI; Auxin response factor 11 | ||||
Swissprot | Q8S983 | 0.0 | ARFK_ORYSJ; Auxin response factor 11 | ||||
TrEMBL | A0A3L6Q5T4 | 0.0 | A0A3L6Q5T4_PANMI; Auxin response factor | ||||
STRING | Si021121m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8673 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Publications ? help Back to Top | |||
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