PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462880182
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 1011aa    MW: 111881 Da    PI: 6.4006
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462880182genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.7e-23144245199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F   ++++ +l+v
  462880182 144 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldfSMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI--RDEKSQLLV 240
                89*********************999*****9555555.49************************************************..4577778** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +v+r+
  462880182 241 GVRRA 245
                **996 PP
2Auxin_resp114.21.2e-37270352183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaas++  F+++YnPr+s+s Fv+++++++ka++++ svGmRf m+fete+ss+rr++Gt+vg+sd+dp+rWpnSkWr+L+
   462880182 270 AAHAASSGGSFTIYYNPRTSPSPFVIPLARYNKATYMQPSVGMRFAMMFETEESSKRRCTGTIVGISDYDPIRWPNSKWRNLQ 352
                 79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-44134273IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-40137258IPR015300DNA-binding pseudobarrel domain
CDDcd100174.49E-21143244No hitNo description
PROSITE profilePS5086312.52144246IPR003340B3 DNA binding domain
SMARTSM010197.4E-23144246IPR003340B3 DNA binding domain
PfamPF023622.2E-21144245IPR003340B3 DNA binding domain
PfamPF065072.9E-33270352IPR010525Auxin response factor
PfamPF023092.0E-9861995IPR033389AUX/IAA domain
PROSITE profilePS5174521.89908992IPR000270PB1 domain
SuperFamilySSF542772.75E-8927987No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1011 aa     Download sequence    Send to blast
MASSLEKATS GVLRNAAALL DEMQLMGEAQ GSKKVMINSE LWHACAGPLV SLPQRGSLVY  60
YFPQGHSEQV AATTKKTPNS RIPNYPSLSS QLLCQVHNIT LHADKETDEI YAQMTLQPVH  120
SETDVFPIPT LGAYTKSKHP TEYFCKNLTA SDTSTHGGFS VPRRAAEKLF PQLDFSMQPP  180
NQELIVRDLH DNMWTFRHIY RGQPKRHLLT TGWSLFVGAK RLKAGDSVLF IRDEKSQLLV  240
GVRRAIRQQP ALSSSVLSTD SMHLGVLAAA AHAASSGGSF TIYYNPRTSP SPFVIPLARY  300
NKATYMQPSV GMRFAMMFET EESSKRRCTG TIVGISDYDP IRWPNSKWRN LQVEWDEHGY  360
GERPERVSIW DIETPENTLV FSSPSLNSKR QCLPSYGGVL RIMWKAELIS FGFLPFAVPG  420
LQVGPANMSL MPRATGHLYG NLQHMPTIGS ELALMLLNQS GQNLGNPLNC HQSSFSSIIQ  480
NVKHGYIPPS TFGTSIGSIK QEARPSNQTQ QQLSTPNIQR SDQESYDVQP GIDSISAQEL  540
NVAREQRNAD SYSSQSISGQ NSKGEHRNKT RRSKKGQSRK TISDKSELSS VPSQICDDQQ  600
NDSEAKLEAE HANCGNNEDS SGTLTKGNFA GDLQVQHVEQ HELMSAPKLE SSKSPDEGKS  660
VSSFPNQGCF SQFFEGLDWM TQSSYYQDSN GIQSVSTSEN IFDPSADMPS TINGDNMEAF  720
QNSCLSECFP SSIQEFVSTP ELNSLTFLSP EMQHLDVQHD GSNLPSTSNS YVQMSFSEES  780
GNQSASLSGL HMEAIHISNT SCSHPMTTEG FDAGMFSKLP NLKESQVLPL QEIHSSSMGT  840
PSCSMDVAEY SIDRSVKPMK PPVRTYTKVQ CRAVQNESSV KILLILNVQK VGSVGIWTVR  900
NETSVKILLI LNVQKVGSVG RSIDVTRFRD YHELRSAIAS MFGLQGKLEH PGSSDWKLVY  960
VDYENDVLLV GDDPWEEFIN CVRCIRILSP SEVQQMSENG VHVLNDCIQI A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.01737531390Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462880182
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699862.10.0auxin response factor 11 isoform X1
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLA0A3L6Q5T40.0A0A3L6Q5T4_PANMI; Auxin response factor
STRINGSi021121m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]