PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462880125

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MYB_related

Protein Properties

Length: 94aa MW: 10349.3 Da PI: 7.6049

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462880125	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.7	5.4e-08	4	48	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WTte + + a + + + +W ++ar +g g+t ++k + 462880125 4 SWTTEQNKVFEMALATYDEDtpdRWQKVARAVGGGKTVDDVKRHC 48 7*****************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	7.0E-6	1	54	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.91E-11	3	55	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
MSSSWTTEQN KVFEMALATY DEDTPDRWQK VARAVGGGKT VDDVKRHCVE LYHDLHDIVS 60 KGRQGSLYGG GSSNSNSNGG SGSNEQRLRY AKPQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462880125

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187005.1	1e-30	protein RADIALIS-like 4
Swissprot	Q1A173	8e-18	RADL6_ARATH; Protein RADIALIS-like 6
TrEMBL	A0A0A9H500	4e-37	A0A0A9H500_ARUDO; Uncharacterized protein
STRING	Pavir.Da01122.1.p	1e-32	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP270	38	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.2	2e-19	RAD-like 6