PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462879359

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

FAR1

Protein Properties

Length: 397aa MW: 43795.5 Da PI: 8.5524

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462879359	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.7	1.7e-27	115	202	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++vGF vr+s+ ++++n it+rtfvCs+eg+re++k + ++++ +r+etr+gC a+++++++ +gk+++t++ +HnH+la 462879359 115 EFYNAYAEKVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KEAKCPRPETRIGCPASMTIRLTANGKYRLTEFIPNHNHQLA 202 6******************97766.************9999.999***********************************97 PP
2	FAR1	85.7	7.1e-27	244	330	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA ++GFsvrk++++ + ++ it+r fvCskeg+re+++ + ++ +++r+etrtgC a++++++ +gk++vt++++ HnH+l 462879359 244 EFYSMYAGKIGFSVRKASMTVN-AENVITRRMFVCSKEGFREKKRGA-KRVQKPRPETRTGCPACMVIRLAANGKYHVTEFVTFHNHQL 330 6**************99998.5566************9998.999**********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.1E-25	115	202	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.1E-23	244	330	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MPSGSENDPQ FTPGSVAAPS LVQTFRPAHA TGGAAADPRL SQQSWPGHVA LLRPCEPWPP 60 HAPVPLMLNS GNPPQNGDAG ADVAAADVNP AIDSCDENML PKINMLFDGE NDAYEFYNAY 120 AEKVGFFVRR STLWTTSKNI ITRRTFVCSR EGFREKKKGA KEAKCPRPET RIGCPASMTI 180 RLTANGKYRL TEFIPNHNHQ LATVSTINML KAKKIRRKAR AVREHLVDDT VRTPEFENED 240 EAYEFYSMYA GKIGFSVRKA SMTVNAENVI TRRMFVCSKE GFREKKRGAK RVQKPRPETR 300 TGCPACMVIR LAANGKYHVT EFVTFHNHQL GAAAASDLVI ASQSAENDQD DGVDLVDGSP 360 DDSIHMQNRI NEKATGYTPE GSLTFPFTLG AGALDFR

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MPSGSENDPQ FTPGSVAAPS LVQTFRPAHA TGGAAADPRL SQQSWPGHVA LLRPCEPWPP  60
HAPVPLMLNS GNPPQNGDAG ADVAAADVNP AIDSCDENML PKINMLFDGE NDAYEFYNAY  120
AEKVGFFVRR STLWTTSKNI ITRRTFVCSR EGFREKKKGA KEAKCPRPET RIGCPASMTI  180
RLTANGKYRL TEFIPNHNHQ LATVSTINML KAKKIRRKAR AVREHLVDDT VRTPEFENED  240
EAYEFYSMYA GKIGFSVRKA SMTVNAENVI TRRMFVCSKE GFREKKRGAK RVQKPRPETR  300
TGCPACMVIR LAANGKYHVT EFVTFHNHQL GAAAASDLVI ASQSAENDQD DGVDLVDGSP  360
DDSIHMQNRI NEKATGYTPE GSLTFPFTLG AGALDFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462879359

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002460862.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0A9SDT0	0.0	A0A0A9SDT0_ARUDO; Uncharacterized protein
STRING	Pavir.Bb03075.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-18	FAR1-related sequence 5