PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462879063

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GRAS

Protein Properties

Length: 861aa MW: 97175 Da PI: 7.4802

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462879063	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	322.4	9e-99	344	662	47	367
GRAS 47 eALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTg 146 A aarla+++s+ly++l +++t+ s+ l+a++l+ ++P+ ++sh++ Nq+Il ++++++vHiiDf+i G+QWp+L++ L++R++gpp lRiTg 462879063 344 CAQAARLAGTGSQLYHKLVAKRTT---ASDMLKAYHLYLAACPFKRLSHFLSNQTILSMTKNATKVHIIDFGIYFGFQWPCLIRRLSKREGGPPVLRITG 440 56789***********999999...9******************************************************************** PP GRAS 147 vgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244 ++ p++g +e++eetg+rLa++A++++vpfe++ +a+++e++++e+L+v+++E+++Vn+ ++ +l de+v+++s+r++vL+++++++P ++++ 462879063 441 IDVPQPGfrPTERIEETGQRLAEYARKFDVPFEYQG-IASKWETIRVEDLKVSKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIV 539 **9*************************.7********************************************************** PP GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344 + +++ + F +rf eal ++salfd+le+++pr++ +r+ +Er l+gre+ nv+aceg++r+er et+++W+ r +aGF ++pl+++++++ak ++ + 462879063 540 NGSYSVPFFITRFREALFHFSALFDMLETTVPRDDPQRALIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFAQAPLNHEIVMKAKDKVKDI 639 ************************************************************************************************** PP GRAS 345 ksdgyrveeesgslvlgWkdrpL 367 + + + ++e+sg+l++gWk+r++ 462879063 640 YHKDFVIDEDSGWLLQGWKGREM 662 888***************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	54.468	257	649	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-96	344	662	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence Send to blast
MTSAGSSSGV AGGGSSTWVA NGAVAISSMS DYLRFLDSQR HMAAEPSSNS SSSMSRTNIE 60 TDNSEDWEFI SDESLNYISR MLEEDIDEKV SMYQAESSAL SATAKPFYDI LGHKFPPSPD 120 HQPIPWSLES PTESGSSNHA QSLTSTFTPN SIGGAVDSNE RYSEQLETYR GFHGQSSQPL 180 MSPSSDSCNS VGVLEDPLIT NGRIPEYLFE SLPTWDFRRG VEEAQKFLPG SDKLVTDLEA 240 VGVARPQETW KDVSFGARKA EVLNSKNIKQ SAFCSDEPDW IEMFDHLLRQ TEKKATVLRE 300 MMRSEASKNA QVTQTQTKPS GPRSRGRKPT KRDVVDLRTI LIHCAQAARL AGTGSQLYHK 360 LVAKRTTASD MLKAYHLYLA ACPFKRLSHF LSNQTILSMT KNATKVHIID FGIYFGFQWP 420 CLIRRLSKRE GGPPVLRITG IDVPQPGFRP TERIEETGQR LAEYARKFDV PFEYQGIASK 480 WETIRVEDLK VSKDEVVIVN CLYRFRNLID ETVAVDSPRN RVLNTIRQVN PAIFIHGIVN 540 GSYSVPFFIT RFREALFHFS ALFDMLETTV PRDDPQRALI ERDLFGREAL NVIACEGSDR 600 VERPETYKQW QVRNLRAGFA QAPLNHEIVM KAKDKVKDIY HKDFVIDEDS GWLLQGWKGR 660 EMAPREVVVN VGALSELSTN HMDLLGVTIS WRKGADVDIS LGVGPLSPIQ QQLSWLLNED 720 AWVLQAIFQK FLYQIILHPS LYKKVRFLKN QLKQRKQWKA YLRGVPNGMV VQKDPLAAAH 780 VRGHQVRKKY KTCKHGQCAR ESDTKVVPER TGSTQEEEDD DDEATKIFSQ QKVDDALKEA 840 VSRVLSMVDS PEATMQYRRI L

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence Send to blast

MTSAGSSSGV AGGGSSTWVA NGAVAISSMS DYLRFLDSQR HMAAEPSSNS SSSMSRTNIE  60
TDNSEDWEFI SDESLNYISR MLEEDIDEKV SMYQAESSAL SATAKPFYDI LGHKFPPSPD  120
HQPIPWSLES PTESGSSNHA QSLTSTFTPN SIGGAVDSNE RYSEQLETYR GFHGQSSQPL  180
MSPSSDSCNS VGVLEDPLIT NGRIPEYLFE SLPTWDFRRG VEEAQKFLPG SDKLVTDLEA  240
VGVARPQETW KDVSFGARKA EVLNSKNIKQ SAFCSDEPDW IEMFDHLLRQ TEKKATVLRE  300
MMRSEASKNA QVTQTQTKPS GPRSRGRKPT KRDVVDLRTI LIHCAQAARL AGTGSQLYHK  360
LVAKRTTASD MLKAYHLYLA ACPFKRLSHF LSNQTILSMT KNATKVHIID FGIYFGFQWP  420
CLIRRLSKRE GGPPVLRITG IDVPQPGFRP TERIEETGQR LAEYARKFDV PFEYQGIASK  480
WETIRVEDLK VSKDEVVIVN CLYRFRNLID ETVAVDSPRN RVLNTIRQVN PAIFIHGIVN  540
GSYSVPFFIT RFREALFHFS ALFDMLETTV PRDDPQRALI ERDLFGREAL NVIACEGSDR  600
VERPETYKQW QVRNLRAGFA QAPLNHEIVM KAKDKVKDIY HKDFVIDEDS GWLLQGWKGR  660
EMAPREVVVN VGALSELSTN HMDLLGVTIS WRKGADVDIS LGVGPLSPIQ QQLSWLLNED  720
AWVLQAIFQK FLYQIILHPS LYKKVRFLKN QLKQRKQWKA YLRGVPNGMV VQKDPLAAAH  780
VRGHQVRKKY KTCKHGQCAR ESDTKVVPER TGSTQEEEDD DDEATKIFSQ QKVDDALKEA  840
VSRVLSMVDS PEATMQYRRI L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-39	365	662	70	368	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462879063

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727971	0.0	KJ727971.1 Zea mays clone pUT6085 GRAS transcription factor (GRAS67) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794111.1	0.0	scarecrow-like protein 9
TrEMBL	A0A3L6S7Z0	0.0	A0A3L6S7Z0_PANMI; Scarecrow-like protein 9
STRING	Pavir.J32327.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-156	GRAS family protein