PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462878849
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 303aa    MW: 32731.3 Da    PI: 9.2378
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462878849genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.3e-17954147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd ll ++v+q+G+++W++I++ +  gR++k+c++rw + 
        462878849  9 KGPWSPEEDALLMRLVEQHGPHRWSLISASIA-GRSGKSCRLRWCNQ 54
                     79******************************.***********985 PP
2Myb_DNA-binding55.51.3e-1763105347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ed l+v a +++G++ W+tIar ++ gRt++++k++w++ 
        462878849  63 PFTPHEDALIVSAQARHGNK-WATIARLLP-GRTDNSIKNHWNSN 105
                      89******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.407459IPR017930Myb domain
SuperFamilySSF466896.36E-318102IPR009057Homeodomain-like
SMARTSM007171.4E-16857IPR001005SANT/Myb domain
PfamPF002492.0E-17954IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-251062IPR009057Homeodomain-like
CDDcd001674.16E-151153No hitNo description
SMARTSM007172.0E-1460108IPR001005SANT/Myb domain
PROSITE profilePS5129418.99260110IPR017930Myb domain
PfamPF002492.3E-1463105IPR001005SANT/Myb domain
CDDcd001674.89E-1263106No hitNo description
Gene3DG3DSA:1.10.10.606.1E-2263108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSTSNVVKKG PWSPEEDALL MRLVEQHGPH RWSLISASIA GRSGKSCRLR WCNQLNPEVH  60
HRPFTPHEDA LIVSAQARHG NKWATIARLL PGRTDNSIKN HWNSNLRRCK RREAAAAAIA  120
AVASTSGSIA PQVPPINMMH GDNNLVADQP VFKRQCVVSH DKSSSALVMP DAGASLGLNS  180
NNTSVVSGPV IDPPMSLSLS LGQPLLPQTP HQATKEPMEA SMRNAGDKVF GNCSSSPPVA  240
DGNAQLLAMI RQMVREEVQL QCGQLAYSLM AATTKGKGCD SCSKSYMSMF ANEPRHRCVT  300
ASE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-3891084103MYB PROTO-ONCOGENE PROTEIN
1h88_C9e-38910858157MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-38910858157MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-3891084103C-Myb DNA-Binding Domain
1msf_C2e-3891084103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462878849
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306304.11e-73transcription factor MYB44
RefseqXP_022681066.17e-73transcription factor CSA-like
SwissprotO231602e-51MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A368QP483e-75A0A368QP48_SETIT; Uncharacterized protein
STRINGSi022959m5e-76(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135442731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-51myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]