PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462878828 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 264aa MW: 29115.2 Da PI: 8.3206 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.1 | 3.8e-12 | 128 | 184 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g 462878828 128 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 184 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 23.4 | 1.5e-07 | 227 | 259 | 1 | 36 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 s y+GV+++++ grW A+I + +k +lg+f 462878828 227 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTF 259 57****************988532...5*******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-9 | 128 | 184 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.45E-18 | 128 | 194 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-15 | 128 | 194 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-13 | 129 | 193 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-23 | 129 | 198 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.477 | 129 | 192 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-5 | 130 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-5 | 174 | 194 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.02E-6 | 227 | 261 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 9.466 | 228 | 264 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-5 | 228 | 261 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.012 | 228 | 263 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MDMDMSSTYP HHWLSFSLSN NYQHGLLEAF SNSSSAPQLG EEGAVEETPK MEDFLGGVGG 60 TGAPPPGPTE DQLGCGGELG SIAAGFLRQH PANGTPENPG AVTIAMGTDV AESDQARRPA 120 ETFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQSRKG RQGGYDKEEK AARAYDLAAL 180 KYWGPTTTTN FPVSNYEKEL EEMKSMTRQE FIASLRRKSS GFSRGASIYR GVTRHHQHGR 240 WQARIGRVAG NKDLYLGTFS KCSC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462878828 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040003 | 1e-155 | BT040003.1 Zea mays full-length cDNA clone ZM_BFc0057O19 mRNA, complete cds. | |||
GenBank | KJ727485 | 1e-155 | KJ727485.1 Zea mays clone pUT5344 AP2-EREBP transcription factor (EREB152) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965682.1 | 1e-166 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 2e-96 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A1E5V5G5 | 1e-175 | A0A1E5V5G5_9POAL; AP2-like ethylene-responsive transcription factor AIL5 | ||||
STRING | Si008325m | 1e-165 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 4e-98 | AP2 family protein |
Publications ? help Back to Top | |||
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