PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462878261 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NF-YA | ||||||||
Protein Properties | Length: 194aa MW: 21462.2 Da PI: 8.1001 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 53.9 | 6e-17 | 110 | 147 | 1 | 39 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpyl 39 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rk l 462878261 110 EEPVYVNAKQYNAILRRRQSRAKAESERKL-IKGRKVSL 147 69****************************.99999655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.7E-9 | 108 | 168 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 17.116 | 109 | 144 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.4E-12 | 111 | 145 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 114 | 134 | IPR018362 | CCAAT-binding factor, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MTSVVQSVSG DHRAEDQHQQ NKQKQAEPED QQEASVTSSG SQTMVGTPSA DYVAAYAPHD 60 MAHAMGQFAY PNVDPYYGSL YAAYGGQPMM HPPLVGMHPT GLPLPTDAIE EPVYVNAKQY 120 NAILRRRQSR AKAESERKLI KGRKVSLCNP LHSAMTWNSK LAVCVHDSGA NNQVNCRIYP 180 PYFRLKIDLP HVVL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462878261 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963231.1 | 1e-88 | nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A3L6RBK9 | 5e-90 | A0A3L6RBK9_PANMI; Nuclear transcription factor Y subunit A-7 | ||||
STRING | Pavir.J06031.1.p | 2e-90 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6555 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 7e-24 | nuclear factor Y, subunit A7 |