PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462878029 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 469aa MW: 51516.9 Da PI: 6.3613 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 128.2 | 9.3e-40 | 131 | 274 | 1 | 147 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lLl+cA+av++g + a++lL++++ +as dgd++qRla +f+eAL+arla+s+s++ + ++s+++ +s+e l a++lf ++ + k+++ aN+ 462878029 131 LRTLLLQCARAVADG-RAGARELLEQIKRHASADGDATQRLARCFAEALEARLAGSGSTTLSLRTTSSSR--SSAEFLGAYRLFTATCCFKKVAFAFANR 227 6789********996.578************************************998888655555554..69************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgv 147 +I +a++g +r+H++D++++ G+QWp+Ll+ La+R++gpps+R + 462878029 228 TICRAAAGRSRLHVVDYGLGLGFQWPSLLRRLAARDGGPPSFRAVAS 274 *******************************************6554 PP | |||||||
2 | GRAS | 91.1 | 1.8e-28 | 301 | 463 | 201 | 373 |
GRAS 201 alaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 al+Vn+ + l++lld+s ++ +rd+vL v++++P +++ + + ++sF+ rf eal ysa+fd+l a++pr se+r+++Er +lg+ + + 462878029 301 ALVVNSLFGLESLLDDSIVVDGpspsPRDAVLGRVRGMRPAAFTLGVVNGCY-GTSFMMRFREALFNYSAVFDALGATMPRGSEQRMVLERDCLGPCVLD 399 89************9986554444449********************99988.679******************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +vaceg +r+ r +++pl+ ++ ++ ++++ + + + v+e++ +l++gW++r L++ SaW 462878029 400 AVACEGPDRTDRFD--------------TQLPLDRAVVGAVREMVKRRQyHKDFVVDEDRRWLLQGWRGRILYAHSAW 463 ********988888..............689**************99999999************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 27.697 | 105 | 469 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.2E-37 | 131 | 274 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.2E-26 | 301 | 463 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 469 aa Download sequence Send to blast |
MMFAPPQDGV GVPSEQQEEE DVALQNLSRM LMEEEEDGRL WTCQYNPALL HVQLSFAHLI 60 SSSSSSSDGE TNSFVINTEE TTFSGRPRKN LHARGDELEE EGAGRARKPR DGGPARRRGG 120 RHEEEGAPAD LRTLLLQCAR AVADGRAGAR ELLEQIKRHA SADGDATQRL ARCFAEALEA 180 RLAGSGSTTL SLRTTSSSRS SAEFLGAYRL FTATCCFKKV AFAFANRTIC RAAAGRSRLH 240 VVDYGLGLGF QWPSLLRRLA ARDGGPPSFR AVASSTWADA VRSAEDHLMS TRTTDDPDDV 300 ALVVNSLFGL ESLLDDSIVV DGPSPSPRDA VLGRVRGMRP AAFTLGVVNG CYGTSFMMRF 360 REALFNYSAV FDALGATMPR GSEQRMVLER DCLGPCVLDA VACEGPDRTD RFDTQLPLDR 420 AVVGAVREMV KRRQYHKDFV VDEDRRWLLQ GWRGRILYAH SAWVADDHA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-24 | 113 | 409 | 1 | 312 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462878029 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827775.1 | 1e-159 | scarecrow-like protein 34 | ||||
TrEMBL | A0A2T8IAD2 | 1e-157 | A0A2T8IAD2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J23608.1.p | 1e-140 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07530.1 | 7e-66 | SCARECROW-like 14 |