PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462878029
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 469aa    MW: 51516.9 Da    PI: 6.3613
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462878029genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS128.29.3e-401312741147
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lLl+cA+av++g  + a++lL++++ +as dgd++qRla +f+eAL+arla+s+s++ +  ++s+++  +s+e l a++lf  ++ + k+++  aN+
  462878029 131 LRTLLLQCARAVADG-RAGARELLEQIKRHASADGDATQRLARCFAEALEARLAGSGSTTLSLRTTSSSR--SSAEFLGAYRLFTATCCFKKVAFAFANR 227
                6789********996.578************************************998888655555554..69************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgv 147
                +I +a++g +r+H++D++++ G+QWp+Ll+ La+R++gpps+R  + 
  462878029 228 TICRAAAGRSRLHVVDYGLGLGFQWPSLLRRLAARDGGPPSFRAVAS 274
                *******************************************6554 PP

2GRAS91.11.8e-28301463201373
       GRAS 201 alaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                al+Vn+ + l++lld+s  ++     +rd+vL  v++++P  +++   +  + ++sF+ rf eal  ysa+fd+l a++pr se+r+++Er +lg+ + +
  462878029 301 ALVVNSLFGLESLLDDSIVVDGpspsPRDAVLGRVRGMRPAAFTLGVVNGCY-GTSFMMRFREALFNYSAVFDALGATMPRGSEQRMVLERDCLGPCVLD 399
                89************9986554444449********************99988.679******************************************** PP

       GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                +vaceg +r+ r                +++pl+  ++  ++ ++++ +  + + v+e++ +l++gW++r L++ SaW
  462878029 400 AVACEGPDRTDRFD--------------TQLPLDRAVVGAVREMVKRRQyHKDFVVDEDRRWLLQGWRGRILYAHSAW 463
                ********988888..............689**************99999999************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.697105469IPR005202Transcription factor GRAS
PfamPF035143.2E-37131274IPR005202Transcription factor GRAS
PfamPF035146.2E-26301463IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MMFAPPQDGV GVPSEQQEEE DVALQNLSRM LMEEEEDGRL WTCQYNPALL HVQLSFAHLI  60
SSSSSSSDGE TNSFVINTEE TTFSGRPRKN LHARGDELEE EGAGRARKPR DGGPARRRGG  120
RHEEEGAPAD LRTLLLQCAR AVADGRAGAR ELLEQIKRHA SADGDATQRL ARCFAEALEA  180
RLAGSGSTTL SLRTTSSSRS SAEFLGAYRL FTATCCFKKV AFAFANRTIC RAAAGRSRLH  240
VVDYGLGLGF QWPSLLRRLA ARDGGPPSFR AVASSTWADA VRSAEDHLMS TRTTDDPDDV  300
ALVVNSLFGL ESLLDDSIVV DGPSPSPRDA VLGRVRGMRP AAFTLGVVNG CYGTSFMMRF  360
REALFNYSAV FDALGATMPR GSEQRMVLER DCLGPCVLDA VACEGPDRTD RFDTQLPLDR  420
AVVGAVREMV KRRQYHKDFV VDEDRRWLLQ GWRGRILYAH SAWVADDHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-241134091312Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462878029
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827775.11e-159scarecrow-like protein 34
TrEMBLA0A2T8IAD21e-157A0A2T8IAD2_9POAL; Uncharacterized protein
STRINGPavir.J23608.1.p1e-140(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.17e-66SCARECROW-like 14