PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462877716

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NF-YC

Protein Properties

Length: 562aa MW: 60652 Da PI: 11.1013

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462877716	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	23	1.6e-07	238	297	13	72
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrr 72 + d+ ++P+ar++++++a++d s +a l+ ka elf+ +++ ++ +a + +++ 462877716 238 VPDMGTCSFPMARVRQLMRAEDDTIHASNDAVFLINKASELFLAKFAENAYRNALKDRKN 297 55777889**********************************998887777776655555 PP
2	NF-YC	36.6	9.9e-12	455	540	13	98
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 + d+ ++P+ar++++++a++d s +a l+ ka elf+ +++ ++ +a + +++++ +++++v + + f+fl d +p+ 462877716 455 VPDMGTCSFPMARVRQLMRAEDDTIHASNDAVFLINKASELFLAKFAENAYRNALKDRKKSIIYDNLSTTVCNQKGFKFLSDFIPQ 540 55777889***************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.6E-11	241	299	IPR009072	Histone-fold
Pfam	PF00808	2.2E-9	245	300	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	2.19E-9	245	299	IPR009072	Histone-fold
SuperFamily	SSF47113	2.51E-15	446	540	IPR009072	Histone-fold
Pfam	PF00808	6.0E-11	462	523	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	8.4E-19	463	540	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MAGKKPTPVK PVPPSAQRTG SAASSPKQTT KASAAGAKAR SPAKAPKVSK EKPAAAKKKR 60 DKAEPEAGAK RKKPQASGEV GAPKKKPGKK GGEPEIKPQK EATSTKKQQS SGKSENPAPT 120 PTKKQKATSR SENRAPTPTK KQQESVKSPK SAKKQQSSGK GEKPASAATT PTKKQQKEAK 180 REKQQAPGGK GKSTPTKRKR DDAEPQNEVR SPKRASSEGE AGTPTPVKKK RKDNKAAVPD 240 MGTCSFPMAR VRQLMRAEDD TIHASNDAVF LINKASELFL AKFAENAYRN ALKDRKNKLV 300 KLGCQLRPSE PEIKPQKEAT STKKQQSSGK SENPAPTPTK KQKATSRSEN RAPTPTKKQQ 360 ESVKSPKSAK KQQSSGKGEK PASAATTPTK KQQKEAKREK QQAPGGKGKS TPTKRKRDDA 420 EPQNEVRSPK RASSEGEAGT PTPVKKKRKD NKAAVPDMGT CSFPMARVRQ LMRAEDDTIH 480 ASNDAVFLIN KASELFLAKF AENAYRNALK DRKKSIIYDN LSTTVCNQKG FKFLSDFIPQ 540 RLRAEDALKA AAGANSNKVL GI

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MAGKKPTPVK PVPPSAQRTG SAASSPKQTT KASAAGAKAR SPAKAPKVSK EKPAAAKKKR  60
DKAEPEAGAK RKKPQASGEV GAPKKKPGKK GGEPEIKPQK EATSTKKQQS SGKSENPAPT  120
PTKKQKATSR SENRAPTPTK KQQESVKSPK SAKKQQSSGK GEKPASAATT PTKKQQKEAK  180
REKQQAPGGK GKSTPTKRKR DDAEPQNEVR SPKRASSEGE AGTPTPVKKK RKDNKAAVPD  240
MGTCSFPMAR VRQLMRAEDD TIHASNDAVF LINKASELFL AKFAENAYRN ALKDRKNKLV  300
KLGCQLRPSE PEIKPQKEAT STKKQQSSGK SENPAPTPTK KQKATSRSEN RAPTPTKKQQ  360
ESVKSPKSAK KQQSSGKGEK PASAATTPTK KQQKEAKREK QQAPGGKGKS TPTKRKRDDA  420
EPQNEVRSPK RASSEGEAGT PTPVKKKRKD NKAAVPDMGT CSFPMARVRQ LMRAEDDTIH  480
ASNDAVFLIN KASELFLAKF AENAYRNALK DRKKSIIYDN LSTTVCNQKG FKFLSDFIPQ  540
RLRAEDALKA AAGANSNKVL GI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	72	KKRDKAEPEAGAKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462877716

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792625.1	2e-92	muscle M-line assembly protein unc-89-like isoform X1
TrEMBL	A0A0A8YHY9	2e-97	A0A0A8YHY9_ARUDO; Uncharacterized protein
STRING	Pavir.Ia00103.1.p	1e-89	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12826	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	8e-27	nuclear factor Y, subunit C10