PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462877666 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 322aa MW: 36058.4 Da PI: 6.594 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.2 | 6.6e-53 | 8 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka.....eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPt+eelv +yL++kv+++k++l ++i+evd+y++ePwdL++ +++ewyfFs +d+ky++g+r+nrat++g+Wkatg+dk+ 462877666 8 VPPGFRFHPTEEELVGYYLARKVASQKIDL-DIIQEVDLYRIEPWDLQErckqG--VtggeeQTTEWYFFSYKDRKYPSGTRTNRATAAGFWKATGRDKP 104 69****************************.99**************9635551..044433555*********************************** PP NAM 92 vlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128 vls+ ++ ++g++ktLvfykgrap+g+ktdW+mheyr+ 462877666 105 VLSSssgggcsSRVVIGMRKTLVFYKGRAPNGRKTDWIMHEYRI 148 ***988777766666***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-56 | 6 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.75 | 8 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-27 | 9 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MEEESCCVPP GFRFHPTEEE LVGYYLARKV ASQKIDLDII QEVDLYRIEP WDLQERCKQG 60 VTGGEEQTTE WYFFSYKDRK YPSGTRTNRA TAAGFWKATG RDKPVLSSSS GGGCSSRVVI 120 GMRKTLVFYK GRAPNGRKTD WIMHEYRIQS NEHAPPQASS PKVLSPDRWC REEGWVVCRA 180 FQKPVPNQRP CLYPTPGYYD NILGGSSYYS AAGAGAADAA VGNIFRPQQL PNFAVVDDDL 240 FESKKHHLFS IPPLQSPTAI SDGYQLTQRC NTVGADDHEL LMIHQHGGQP AAAIDWNFLD 300 SLLQSTASQL HDPTSSLPRA DY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-49 | 3 | 183 | 10 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462877666 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448830.1 | 1e-125 | NAC domain-containing protein 30 | ||||
Refseq | XP_021318357.1 | 1e-125 | NAC domain-containing protein 30 | ||||
TrEMBL | C5YB40 | 1e-124 | C5YB40_SORBI; Uncharacterized protein | ||||
STRING | Sb06g034010.1 | 1e-124 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2594 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71930.1 | 8e-85 | vascular related NAC-domain protein 7 |