PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462877666
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 322aa    MW: 36058.4 Da    PI: 6.594
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462877666genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.26.6e-5381481128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka.....eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                +ppGfrFhPt+eelv +yL++kv+++k++l ++i+evd+y++ePwdL++             +++ewyfFs +d+ky++g+r+nrat++g+Wkatg+dk+
  462877666   8 VPPGFRFHPTEEELVGYYLARKVASQKIDL-DIIQEVDLYRIEPWDLQErckqG--VtggeeQTTEWYFFSYKDRKYPSGTRTNRATAAGFWKATGRDKP 104
                69****************************.99**************9635551..044433555*********************************** PP

        NAM  92 vlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                vls+       ++ ++g++ktLvfykgrap+g+ktdW+mheyr+
  462877666 105 VLSSssgggcsSRVVIGMRKTLVFYKGRAPNGRKTDWIMHEYRI 148
                ***988777766666***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-566183IPR003441NAC domain
PROSITE profilePS5100555.758183IPR003441NAC domain
PfamPF023651.5E-279148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEEESCCVPP GFRFHPTEEE LVGYYLARKV ASQKIDLDII QEVDLYRIEP WDLQERCKQG  60
VTGGEEQTTE WYFFSYKDRK YPSGTRTNRA TAAGFWKATG RDKPVLSSSS GGGCSSRVVI  120
GMRKTLVFYK GRAPNGRKTD WIMHEYRIQS NEHAPPQASS PKVLSPDRWC REEGWVVCRA  180
FQKPVPNQRP CLYPTPGYYD NILGGSSYYS AAGAGAADAA VGNIFRPQQL PNFAVVDDDL  240
FESKKHHLFS IPPLQSPTAI SDGYQLTQRC NTVGADDHEL LMIHQHGGQP AAAIDWNFLD  300
SLLQSTASQL HDPTSSLPRA DY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-49318310168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462877666
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448830.11e-125NAC domain-containing protein 30
RefseqXP_021318357.11e-125NAC domain-containing protein 30
TrEMBLC5YB401e-124C5YB40_SORBI; Uncharacterized protein
STRINGSb06g034010.11e-124(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.18e-85vascular related NAC-domain protein 7