PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462877636 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | HB-other | ||||||||
Protein Properties | Length: 1561aa MW: 170047 Da PI: 6.3146 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 33.9 | 5.4e-11 | 683 | 724 | 12 | 53 |
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 + L+++Fe+++yps++++e LA++lgLt +qV WF R 462877636 683 KQKLKNHFERDPYPSRATKENLAQELGLTFTQVDKWFATTRH 724 689**********************************87775 PP | |||||||
2 | Homeobox | 30.9 | 4.7e-10 | 890 | 936 | 7 | 53 |
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 f + ++ L+++Fek++yps++++e LA+ lgLt qV WF R 462877636 890 FGPIVTQKLKDHFEKDPYPSRATKENLAQVLGLTFIQVDKWFATTRH 936 55667899**********************************87775 PP | |||||||
3 | Homeobox | 31.4 | 3.3e-10 | 1155 | 1197 | 10 | 52 |
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +q L+++Fek++yps+++ + LA++lgLt qV+ WF R 462877636 1155 QQGLKLKAHFEKDPYPSRSTVQNLAQELGLTFIQVRRWFSSTR 1197 67789**********************************8665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.6E-12 | 672 | 733 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.15E-11 | 674 | 729 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.28E-12 | 676 | 727 | No hit | No description |
Pfam | PF00046 | 2.2E-8 | 683 | 724 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-12 | 684 | 736 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.876 | 686 | 729 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-11 | 876 | 932 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.167 | 881 | 941 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.9E-12 | 883 | 945 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.88E-11 | 883 | 940 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.51E-11 | 884 | 939 | No hit | No description |
Pfam | PF00046 | 1.7E-7 | 890 | 936 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.6E-8 | 1141 | 1207 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 11.904 | 1143 | 1203 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.11E-9 | 1154 | 1197 | No hit | No description |
Pfam | PF00046 | 1.0E-7 | 1155 | 1197 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-10 | 1155 | 1198 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.14E-9 | 1155 | 1198 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1561 aa Download sequence Send to blast |
MGKKGSEVSP SKRYPLRSTH SSGRVLRSAS NKNNTACSKT LNDSATAQPA LRKRKSGISS 60 GSTNNSVRVL RSASKNKDDV CNESLNDSIA GEPAANKRTG IGPSKAASPI SSVRVLRSAA 120 KNKDDACNES LNDSIAGEPA TNKKTGIGPS KATSPINNVR VLRSASKIED EAPLNGSTAG 180 EQAAHERKFV TPLKVGHPNN SVRVLRSASK NKNDVCNESL NDSTVAQPSA KKRKTGSPLK 240 VGSPPSSARV LRSNSKGKNE TFDEPVNDSP AAQPATRKRK SDTPPNEGSQ KLGVRVLRSA 300 SKKENYACFE PQNVSTSGQP AVRKRQGVRS SQERSPKKAY LKVCQRVRSI LNRMNYEQSL 360 IQAYASEGWK GQSLEKIRPE KELERAKAEI LRCKIKIREA FQNMDSLLSE GKLEESLFDS 420 AGEIFSEDSL QGMKDGFVLH KVFPEAASPA NGSKQLDASD PPVGEENDYN PALAEAHMGN 480 EVRSDAGIDG KGTVDDLGLP SEDSEDDDFD PAGPDSSEDE KNESHSEESD FTSDSDDFCT 540 EIAKSSGQGE VSSSPLSNVN EESCNDAFME MDLDQDVVLP VSGRRQVERL DYKKLYDEAY 600 GEESSSYSDD EEWSGKENLE DNETDGSVRP GKRRTRRASA GHSVNEHTPQ DERHYGSVNE 660 HNADVLRSNG SNSTARRFGP IIKQKLKNHF ERDPYPSRAT KENLAQELGL TFTQVDKWFA 720 TTRHSSRVAA AKKGKHTGSH TTMDNDGTTV DSTQVREPND EVLVKLTAEG NGLVYEGELM 780 QNNLDEVNKE DMLLSRAETE TEAHGKESSD QSDDDKDWSG TSTSQTGLED IEIDSLAASN 840 RAKQLSRRAP VRQQNHEHTP LSERRHGSVE QHTETPCSDR SSGKARKYHF GPIVTQKLKD 900 HFEKDPYPSR ATKENLAQVL GLTFIQVDKW FATTRHSSRV AAAKKGKRTG SHTTIDNGGT 960 TVDGAQVREP NDEVLVKLTA EGNGLVYEGE LMQNNLDEVN KEDMLLSRAE TETEAHGKES 1020 SDQSDDDKDW SGTSTSQTGL EDIEIDSLAA SNRAKQLSRR APVRQQNHEH TPLSERIHGY 1080 VNERQTETPC SDGSSGKARK YHFGPIVTQG SSLRDNTAPA HSTGAPPPCT ANTVTACTTL 1140 SRMTRRSELE LGASQQGLKL KAHFEKDPYP SRSTVQNLAQ ELGLTFIQVR RWFSSTRHYS 1200 SVSSAKKGKD PGNQTTEKND GTTVDSIQGM ESSNLMENPT ADRNDMASEK LMLQINLNEG 1260 NNDDIILNQY PSCEETVVTT PTAISREVGP PGYGPGENQG NGALWNTAFE QGLNTTPSTV 1320 SIEVGPPGYG LGENQGYGAS WNTISEQRIL TTPTATTMSM SHEVGPPGYG PGENQASAAS 1380 WNTSFKQQEI MTPNTSSREA GPPGYGSREG QVNGASWNTS SEQRVGTAPS TTISRQVGLP 1440 GYGPGENQVS GASWNTSTEQ RVVMTPSTIP REVGPPGYWP GEIQGNSASW NKSCEKSVLM 1500 TPSTTSNKGS HLGYWPRENQ GNGASRNVES PKGRSSEKLE LDDEARKKAI ARELRRMKKF 1560 R |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 275 | 280 | TRKRKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462877636 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814926.1 | 0.0 | uncharacterized protein LOC112892070 isoform X2 | ||||
TrEMBL | A0A1E5V1T0 | 0.0 | A0A1E5V1T0_9POAL; Homeobox protein HOX1A | ||||
STRING | GRMZM2G351018_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4393 | 37 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 1e-25 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain |