PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462877018 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 596aa MW: 67433 Da PI: 5.1063 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.3 | 1.5e-49 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtd elv++yLk+k+ gkkl + ++i+ev++yk+ PwdLp k ++++++ ew+fF++rdkky++g+r+nrat +gyWk++gkd++++ +++ 462877018 6 LPPGFRFHPTDVELVSYYLKRKIMGKKLIV-DAISEVELYKFAPWDLPdKsCLRSRDLEWFFFCPRDKKYPNGSRTNRATPNGYWKTSGKDRTIML-NSR 103 79*************************988.89**************96347777888**************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg kktL+f++g+apkg +tdWvm ey++ 462877018 104 IVGSKKTLIFHEGKAPKGDRTDWVMYEYKM 133 ****************************97 PP | |||||||
2 | NAM | 159.3 | 1.5e-49 | 222 | 349 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtd elv++yLk+k+ gkkl + ++i+ev++yk+ PwdLp k ++++++ ew+fF++rdkky++g+r+nrat +gyWk++gkd++++ +++ 462877018 222 LPPGFRFHPTDVELVSYYLKRKIMGKKLIV-DAISEVELYKFAPWDLPdKsCLRSRDLEWFFFCPRDKKYPNGSRTNRATPNGYWKTSGKDRTIML-NSR 319 79*************************988.89**************96347777888**************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg kktL+f++g+apkg +tdWvm ey++ 462877018 320 IVGSKKTLIFHEGKAPKGDRTDWVMYEYKM 349 ****************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-60 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.794 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-25 | 7 | 132 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.93E-61 | 215 | 372 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.794 | 222 | 372 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-25 | 223 | 348 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 596 aa Download sequence Send to blast |
MAQTSLPPGF RFHPTDVELV SYYLKRKIMG KKLIVDAISE VELYKFAPWD LPDKSCLRSR 60 DLEWFFFCPR DKKYPNGSRT NRATPNGYWK TSGKDRTIML NSRIVGSKKT LIFHEGKAPK 120 GDRTDWVMYE YKMEDDSLVS AGFSKDAYVL CKIFKKSGLG PRIGEQYGAP FNEDEWENAE 180 AQTSMFNLRL QFPILSDHTG PSKYPMQHAA SCKRKVMAQT SLPPGFRFHP TDVELVSYYL 240 KRKIMGKKLI VDAISEVELY KFAPWDLPDK SCLRSRDLEW FFFCPRDKKY PNGSRTNRAT 300 PNGYWKTSGK DRTIMLNSRI VGSKKTLIFH EGKAPKGDRT DWVMYEYKME DDSLVSAGFS 360 KDAYVLCKIF KKSGLGPRIG EQYGAPFNED EWENAEGQTS MFNLRPSSEV VNPVADENDQ 420 HDVPATFVRE ESSFDATAGT CVEDLTFGIV AAPAIQDGYQ SENNVSDEVN NPPEFDGFLL 480 EELSKFLADS PVNDNAVGEY SGLPPMSEAE LQAFQVNTFD LYNELSGFSG SGGEPNNFGT 540 VAGPMEQNIL PADRQLSTDD FIELNDLLAP DTSFPCEYPW LSSINAKHLR YVSPCQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-51 | 2 | 373 | 6 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462877018 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014660428.1 | 0.0 | NAC domain-containing protein 82 | ||||
Swissprot | Q9FY82 | 8e-78 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A368QI29 | 0.0 | A0A368QI29_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J02083.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4731 | 36 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64060.1 | 1e-82 | NAC domain containing protein 103 |
Publications ? help Back to Top | |||
---|---|---|---|
|