PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462877018
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 596aa    MW: 67433 Da    PI: 5.1063
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462877018genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.31.5e-4961331128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                lppGfrFhPtd elv++yLk+k+ gkkl + ++i+ev++yk+ PwdLp k ++++++ ew+fF++rdkky++g+r+nrat +gyWk++gkd++++  +++
  462877018   6 LPPGFRFHPTDVELVSYYLKRKIMGKKLIV-DAISEVELYKFAPWDLPdKsCLRSRDLEWFFFCPRDKKYPNGSRTNRATPNGYWKTSGKDRTIML-NSR 103
                79*************************988.89**************96347777888**************************************.999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 vg kktL+f++g+apkg +tdWvm ey++
  462877018 104 IVGSKKTLIFHEGKAPKGDRTDWVMYEYKM 133
                ****************************97 PP

2NAM159.31.5e-492223491128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                lppGfrFhPtd elv++yLk+k+ gkkl + ++i+ev++yk+ PwdLp k ++++++ ew+fF++rdkky++g+r+nrat +gyWk++gkd++++  +++
  462877018 222 LPPGFRFHPTDVELVSYYLKRKIMGKKLIV-DAISEVELYKFAPWDLPdKsCLRSRDLEWFFFCPRDKKYPNGSRTNRATPNGYWKTSGKDRTIML-NSR 319
                79*************************988.89**************96347777888**************************************.999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 vg kktL+f++g+apkg +tdWvm ey++
  462877018 320 IVGSKKTLIFHEGKAPKGDRTDWVMYEYKM 349
                ****************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-603156IPR003441NAC domain
PROSITE profilePS5100556.7946156IPR003441NAC domain
PfamPF023652.8E-257132IPR003441NAC domain
SuperFamilySSF1019416.93E-61215372IPR003441NAC domain
PROSITE profilePS5100556.794222372IPR003441NAC domain
PfamPF023652.8E-25223348IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MAQTSLPPGF RFHPTDVELV SYYLKRKIMG KKLIVDAISE VELYKFAPWD LPDKSCLRSR  60
DLEWFFFCPR DKKYPNGSRT NRATPNGYWK TSGKDRTIML NSRIVGSKKT LIFHEGKAPK  120
GDRTDWVMYE YKMEDDSLVS AGFSKDAYVL CKIFKKSGLG PRIGEQYGAP FNEDEWENAE  180
AQTSMFNLRL QFPILSDHTG PSKYPMQHAA SCKRKVMAQT SLPPGFRFHP TDVELVSYYL  240
KRKIMGKKLI VDAISEVELY KFAPWDLPDK SCLRSRDLEW FFFCPRDKKY PNGSRTNRAT  300
PNGYWKTSGK DRTIMLNSRI VGSKKTLIFH EGKAPKGDRT DWVMYEYKME DDSLVSAGFS  360
KDAYVLCKIF KKSGLGPRIG EQYGAPFNED EWENAEGQTS MFNLRPSSEV VNPVADENDQ  420
HDVPATFVRE ESSFDATAGT CVEDLTFGIV AAPAIQDGYQ SENNVSDEVN NPPEFDGFLL  480
EELSKFLADS PVNDNAVGEY SGLPPMSEAE LQAFQVNTFD LYNELSGFSG SGGEPNNFGT  540
VAGPMEQNIL PADRQLSTDD FIELNDLLAP DTSFPCEYPW LSSINAKHLR YVSPCQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-5123736169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462877018
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660428.10.0NAC domain-containing protein 82
SwissprotQ9FY828e-78NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A368QI290.0A0A368QI29_SETIT; Uncharacterized protein
STRINGPavir.J02083.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-82NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]