PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462876904
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MIKC_MADS
Protein Properties Length: 259aa    MW: 28988.8 Da    PI: 9.5471
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462876904genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52.1e-29959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krien++ rqvtf+kRrng+lKKA+ELS+LCdae+a+iifs +g+lyeys+
  462876904  9 KRIENTTSRQVTFCKRRNGLLKKAYELSILCDAEIALIIFSGRGRLYEYSN 59
               79***********************************************95 PP
2K-box114.31.1e-378517411100
      K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 + +++ qqe+akL+++i+ Lq+++Rhl+Ge+++++++keL++Le++Le+++ +iRskK+ell+++ie++qk+e +lq+en++Lr+k++e
  462876904  85 VNSHQYFQQEAAKLRQQIQILQNSNRHLMGESIGNMTVKELKNLENRLERGIGRIRSKKHELLFAEIEYMQKREADLQNENMYLRAKVAE 174
                5789***********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.151161IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-31274IPR002100Transcription factor, MADS-box
CDDcd002657.92E-45275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-2986172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.94588178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTSRQVT FCKRRNGLLK KAYELSILCD AEIALIIFSG RGRLYEYSNN  60
SIRSTIERYK KASASTSGLA PVIDVNSHQY FQQEAAKLRQ QIQILQNSNR HLMGESIGNM  120
TVKELKNLEN RLERGIGRIR SKKHELLFAE IEYMQKREAD LQNENMYLRA KVAEADRAQE  180
QAAEGHEIVP ATAGGGATEL QALPASFDPR SYYQQVSMLA AASASSSQYS EHPGQEHHQT  240
ALHLGYHIKV DAAAGKGLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-20173173Myocyte-specific enhancer factor 2B
1tqe_Q9e-20173173Myocyte-specific enhancer factor 2B
1tqe_R9e-20173173Myocyte-specific enhancer factor 2B
1tqe_S9e-20173173Myocyte-specific enhancer factor 2B
6c9l_A9e-20173173Myocyte-specific enhancer factor 2B
6c9l_B9e-20173173Myocyte-specific enhancer factor 2B
6c9l_C9e-20173173Myocyte-specific enhancer factor 2B
6c9l_D9e-20173173Myocyte-specific enhancer factor 2B
6c9l_E9e-20173173Myocyte-specific enhancer factor 2B
6c9l_F9e-20173173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462876904
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970830.11e-143MADS-box transcription factor 21
SwissprotQ8RU311e-137MAD21_ORYSJ; MADS-box transcription factor 21
TrEMBLA0A3Q8C5F91e-152A0A3Q8C5F9_BAMML; MADS21
STRINGSi002551m1e-143(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.12e-91MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dreni L, et al.
    The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice.
    Plant J., 2007. 52(4): p. 690-9
    [PMID:17877710]