PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462876895 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 299aa MW: 34211.2 Da PI: 9.7804 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 112.1 | 6.1e-35 | 8 | 97 | 1 | 91 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv++yL+++++g ++ + +i+e+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg d++ 462876895 8 LPPGFRFHPTDEELVMHYLCRRCTGAPIAV-PIIAEIDLYKFDPWQLPRMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADQP 97 79**************************99.88***************7666789********************************9975 PP | |||||||
2 | NAM | 39.2 | 2.1e-12 | 208 | 239 | 97 | 128 |
NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + v +kk Lvfy g+apkgekt+W+mheyrl 462876895 208 PKPVAIKKALVFYAGKAPKGEKTNWIMHEYRL 239 56799*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-40 | 5 | 96 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.149 | 8 | 260 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-16 | 9 | 96 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.7E-11 | 206 | 243 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-5 | 206 | 239 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MSGQDLHLPP GFRFHPTDEE LVMHYLCRRC TGAPIAVPII AEIDLYKFDP WQLPRMALYG 60 EKEWYFFSPR DRKYPNGSRP NRAAGSGYWK ATGADQPGGX XXXXXXXXXX XXXXXXXXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXA PKKPVGSPKP VAIKKALVFY AGKAPKGEKT NWIMHEYRLA 240 DVDRSARRKN SLRLSEWERT FASDPVNPAG SMLDAVNPAG AMGGDPLLQD ILMYWGKPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-48 | 5 | 97 | 12 | 104 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses (PubMed:20632034). Transcription activator involved in response to abiotic and biotic stresses. Involved in drought and salt stress responses, and defense response to the rice blast fungus (PubMed:17587305). Transcription activator involved tolerance to cold and salt stresses (PubMed:18273684). Transcription activator involved in tolerance to drought stress. Targets directly and activates genes involved in membrane modification, nicotianamine (NA) biosynthesis, glutathione relocation, accumulation of phosphoadenosine phosphosulfate and glycosylation in roots (PubMed:27892643). Controls root growth at early vegetative stage through chromatin modification and histone lysine deacytaltion by HDAC1 (PubMed:19453457). {ECO:0000269|PubMed:17587305, ECO:0000269|PubMed:18273684, ECO:0000269|PubMed:19453457, ECO:0000269|PubMed:20632034, ECO:0000269|PubMed:27892643}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462876895 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress, cold stress and abscisic acid (ABA) (PubMed:20632034, PubMed:27892643). Induced by methyl jasmonate (PubMed:20632034, PubMed:11332734). Induced by infection with the rice blast fungus Magnaporthe oryzae (PubMed:11332734). {ECO:0000269|PubMed:11332734, ECO:0000269|PubMed:20632034, ECO:0000269|PubMed:27892643}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028185 | 1e-119 | AB028185.1 Oryza sativa mRNA for OsNAC6 protein, complete cds. | |||
GenBank | AK068392 | 1e-119 | AK068392.1 Oryza sativa Japonica Group cDNA clone:J013149P14, full insert sequence. | |||
GenBank | CT841730 | 1e-119 | CT841730.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C102I24, full insert sequence. | |||
GenBank | EU846993 | 1e-119 | EU846993.1 Oryza sativa Japonica Group clone KCS089G05 NAC6 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564785.1 | 4e-61 | NAC domain-containing protein 48 | ||||
Swissprot | Q7F2L3 | 1e-61 | NAC48_ORYSJ; NAC domain-containing protein 48 | ||||
TrEMBL | I1HU19 | 1e-59 | I1HU19_BRADI; Uncharacterized protein | ||||
STRING | Pavir.J04049.1.p | 1e-60 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 9e-57 | NAC family protein |