PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462876817 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 103aa MW: 10561.8 Da PI: 4.176 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 68 | 3.2e-21 | 2 | 54 | 28 | 77 |
TCP 28 caarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaes 77 +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg++ +++++ +++ 462876817 2 VAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGSGVTPEEAPpaaVPVT 54 8*************************************777774333222222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 19.483 | 1 | 36 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.7E-16 | 2 | 44 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 103 aa Download sequence Send to blast |
MVAARVFQLT RELGHRTDGE TIEWLLRQAE PSIIAATGSG VTPEEAPPAA VPVTHSPAAG 60 QGGAASAPYV PVPYYTALLM QPPPVEEPAA SASVSAATAE QND |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462876817 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK372737 | 5e-64 | AK372737.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3010N16. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581062.1 | 2e-42 | transcription factor PCF1 | ||||
Swissprot | O23875 | 7e-36 | PCF1_ORYSJ; Transcription factor PCF1 | ||||
TrEMBL | A0A0A9QH27 | 2e-44 | A0A0A9QH27_ARUDO; Uncharacterized protein | ||||
STRING | BRADI5G02880.1 | 7e-42 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14172 | 26 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G23280.1 | 2e-19 | TCP family protein |