PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462876718 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 323aa MW: 35607.8 Da PI: 9.8479 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.1 | 3.3e-11 | 46 | 102 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ krk + g ++ +++Aa+a++ a++k++g 462876718 46 SSYRGVTRHRWTGRYEAHLWDnTC-RKegqKRKGRQ-GGYDKEDKAARAYDLAALKYWG 102 67*******************443.44556667777.6699999*************98 PP | |||||||
2 | AP2 | 48.8 | 1.8e-15 | 145 | 197 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++++grW A+I + +k +lg+f t+ eAa+a++ a++k++g+ 462876718 145 SIYRGVTRHHQNGRWQARIGRVAG---NKDLYLGTFATEAEAAEAYDIAALKFRGA 197 57****************988532...5**********99*************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.2E-8 | 46 | 102 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.71E-17 | 46 | 110 | No hit | No description |
SuperFamily | SSF54171 | 1.31E-14 | 46 | 111 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.7E-19 | 47 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-13 | 47 | 111 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.543 | 47 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-7 | 48 | 59 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.2E-10 | 145 | 196 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.14E-11 | 145 | 206 | No hit | No description |
SuperFamily | SSF54171 | 2.35E-17 | 145 | 205 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.3E-29 | 146 | 210 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-18 | 146 | 204 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.769 | 146 | 204 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-7 | 186 | 206 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 323 aa Download sequence Send to blast |
MATPASPEVA TTAITVAGPD ASSSALAPPP PSPALPLVHA AGTRTSSYRG VTRHRWTGRY 60 EAHLWDNTCR KEGQKRKGRQ GGYDKEDKAA RAYDLAALKY WGANATTNFP KENYVNEIKE 120 MQFMGRHEVV ASLRRKSSGF ARGASIYRGV TRHHQNGRWQ ARIGRVAGNK DLYLGTFATE 180 AEAAEAYDIA ALKFRGANAV TNFEPSRYNL EAIALRDLPV NGPGRRLIQN PASETQGQVT 240 LNAPSSFSQQ SSNSLQPYLL PNLQQQLQPQ TSHPLQALPP ADYNYTYEPN FYWPYGTVEQ 300 KVQLDSKLEM VNGLLQLANS TAN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462876718 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003561687.1 | 1e-142 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Refseq | XP_021318170.1 | 1e-142 | AP2-like ethylene-responsive transcription factor AIL7 isoform X1 | ||||
Swissprot | Q6PQQ3 | 1e-100 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A0D9VTA9 | 1e-144 | A0A0D9VTA9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G13190.1 | 1e-145 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13579 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G10510.2 | 7e-86 | AINTEGUMENTA-like 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|