PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462876522
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ZF-HD
Protein Properties Length: 155aa    MW: 17081.8 Da    PI: 9.179
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462876522genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer87.61.3e-274291557
  ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                 +Y eCl+NhAas Gg ++DGCgEfmp+ +    a+ l+CaACgCHR+FHRr v
    462876522 42 VYLECLRNHAASAGGLVLDGCGEFMPAADP---ASLLRCAACGCHRSFHRRAV 91
                 79************************9333...4678**************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.0E-234290IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.7984390IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.9E-244390IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-134389IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.17E-10101151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-20101151IPR009057Homeodomain-like
TIGRFAMsTIGR015651.8E-19102148IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MDVKYSKPAL FQRDGKVEAT KKLEPVPAWA WGRATAIEPA GVYLECLRNH AASAGGLVLD  60
GCGEFMPAAD PASLLRCAAC GCHRSFHRRA VVALGLPPPP PEQKERMRAL SERMGWRLQK  120
RDEAAVEGCC REIGVTRGVF KVWMHNNKHN FGLSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A1e-151021502775ZF-HD homeobox family protein
1wh7_A1e-151001502575ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462876522
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880078e-42AK288007.1 Oryza sativa Japonica Group cDNA, clone: J075112P06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593275.12e-36PREDICTED: zinc-finger homeodomain protein 10-like isoform X1
RefseqXP_016471282.12e-36PREDICTED: zinc-finger homeodomain protein 10-like
RefseqXP_018624241.11e-36PREDICTED: zinc-finger homeodomain protein 10-like isoform X2
SwissprotQ9SB612e-31ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A0E0QRE21e-42A0A0E0QRE2_ORYRU; Uncharacterized protein
TrEMBLM0T3L81e-42M0T3L8_MUSAM; Uncharacterized protein
STRINGORUFI09G10950.12e-43(Oryza rufipogon)
STRINGGSMUA_Achr6P02700_0012e-43(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60480.13e-22homeobox protein 26
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]