PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462876522 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 155aa MW: 17081.8 Da PI: 9.179 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 87.6 | 1.3e-27 | 42 | 91 | 5 | 57 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +Y eCl+NhAas Gg ++DGCgEfmp+ + a+ l+CaACgCHR+FHRr v 462876522 42 VYLECLRNHAASAGGLVLDGCGEFMPAADP---ASLLRCAACGCHRSFHRRAV 91 79************************9333...4678**************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.0E-23 | 42 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.798 | 43 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.9E-24 | 43 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-13 | 43 | 89 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.17E-10 | 101 | 151 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 101 | 151 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.8E-19 | 102 | 148 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MDVKYSKPAL FQRDGKVEAT KKLEPVPAWA WGRATAIEPA GVYLECLRNH AASAGGLVLD 60 GCGEFMPAAD PASLLRCAAC GCHRSFHRRA VVALGLPPPP PEQKERMRAL SERMGWRLQK 120 RDEAAVEGCC REIGVTRGVF KVWMHNNKHN FGLSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 1e-15 | 102 | 150 | 27 | 75 | ZF-HD homeobox family protein |
1wh7_A | 1e-15 | 100 | 150 | 25 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462876522 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK288007 | 8e-42 | AK288007.1 Oryza sativa Japonica Group cDNA, clone: J075112P06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009593275.1 | 2e-36 | PREDICTED: zinc-finger homeodomain protein 10-like isoform X1 | ||||
Refseq | XP_016471282.1 | 2e-36 | PREDICTED: zinc-finger homeodomain protein 10-like | ||||
Refseq | XP_018624241.1 | 1e-36 | PREDICTED: zinc-finger homeodomain protein 10-like isoform X2 | ||||
Swissprot | Q9SB61 | 2e-31 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A0E0QRE2 | 1e-42 | A0A0E0QRE2_ORYRU; Uncharacterized protein | ||||
TrEMBL | M0T3L8 | 1e-42 | M0T3L8_MUSAM; Uncharacterized protein | ||||
STRING | ORUFI09G10950.1 | 2e-43 | (Oryza rufipogon) | ||||
STRING | GSMUA_Achr6P02700_001 | 2e-43 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60480.1 | 3e-22 | homeobox protein 26 |
Publications ? help Back to Top | |||
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