PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462876498

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MIKC_MADS

Protein Properties

Length: 199aa MW: 22826 Da PI: 6.6856

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462876498	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.1	2.3e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRrng+lKKA E+SvLCdaev +ifss gkly+++s 462876498 9 KRIENSTNRQVTFSKRRNGLLKKAREISVLCDAEVGAVIFSSAGKLYDFCS 59 79***********************************************96 PP
2	K-box	69	1.5e-23	71	156	1	86
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 yq++sgk l+++k++s + e++++kke++n+q e+Rhl+GedL+sL+ keL +e++L+++l++ +k n +l ++ + l k ++ 462876498 71 YQTNSGKILWDEKHKSISAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGLTNLNEKLNTMLEDENKLLAFKLHQ 156 89999999******************************************************************998877666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.9E-42	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.983	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-34	2	96	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.51E-45	2	80	No hit	No description
PRINTS	PR00404	2.0E-30	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.4E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-30	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-30	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	4.4E-13	82	153	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	11.317	84	171	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRNGLLK KAREISVLCD AEVGAVIFSS AGKLYDFCSP 60 KTSLSKILEK YQTNSGKILW DEKHKSISAE IDRIKKENDN MQIELRHLKG EDLNSLQPKE 120 LIMIEEALDN GLTNLNEKLN TMLEDENKLL AFKLHQQDAE LSGSMRDLEL GYHPDRDFEA 180 QMPITFRVQP SHPNLQDNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-19	1	86	1	78	MEF2C
5f28_B	1e-19	1	86	1	78	MEF2C
5f28_C	1e-19	1	86	1	78	MEF2C
5f28_D	1e-19	1	86	1	78	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269\|PubMed:14704206}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462876498

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU740322	1e-154	KU740322.1 Aristida purpurea PISTILLATA-like MADS-box transcription factor PI-2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025816957.1	1e-136	MADS-box transcription factor 2
Swissprot	Q40702	1e-133	MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBL	A0A2S3HPC7	1e-135	A0A2S3HPC7_9POAL; Uncharacterized protein
TrEMBL	A0A3L6RIC4	1e-135	A0A3L6RIC4_PANMI; MADS-box transcription factor 2
STRING	Pavir.Ea03625.1.p	1e-135	(Panicum virgatum)
STRING	Si002929m	1e-135	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3434	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	4e-69	MIKC_MADS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]