PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462876216
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 342aa    MW: 39282.4 Da    PI: 6.8388
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462876216genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.92.7e-5571361129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                +ppGfrFhPtdeelv++yL+kkv+ kk++l +vik++d+y++ePwdL++k+k    e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ k+
  462876216   7 VPPGFRFHPTDEELVDYYLRKKVALKKIDL-DVIKDIDLYRIEPWDLQEKCKIgpeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKPIYV-KN 104
                69****************************.9***************964444444666**************************************.99 PP

        NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                 lvg++ktLvfykgrap+g+k+dW+mheyrle
  462876216 105 CLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                9*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-605156IPR003441NAC domain
PROSITE profilePS5100558.9737156IPR003441NAC domain
PfamPF023652.5E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDAFTHVPPG FRFHPTDEEL VDYYLRKKVA LKKIDLDVIK DIDLYRIEPW DLQEKCKIGP  60
EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YVKNCLVGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNKN GIPHEEGWVV CRVFRKRLAT VQRMAGDSPY WFNDHGGFMA  180
PELGGSPRQA ALHRQQSGMV YHRHPSFPAC KVELEYHHLL PQEHLLQLPQ LESPNKLPDL  240
IGSVATLPPC SLTQEQIASR YTEQQLQAEQ VVYMTAGDAS GTDWRDLDKF VASQLIHGDA  300
TPKESSSYSN PVQMFQQAEE KEEALDYVST SASCGGENDL WK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-49215710169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462876216
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448236.10.0NAC domain-containing protein 7
SwissprotQ9FWX21e-125NAC7_ARATH; NAC domain-containing protein 7
TrEMBLC5YCY60.0C5YCY6_SORBI; Uncharacterized protein
STRINGSb06g023780.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23703892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.12e-90NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]