PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462875823
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 733aa    MW: 81082 Da    PI: 4.7026
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462875823genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.7e-16187234148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++l d+v+  G g+W+ +    g++R++k+c++rw ++l
        462875823 187 KGPWTPEEDKRLRDYVRANGEGNWNQVRINAGLNRCGKSCRLRWSNHL 234
                      79*******************************************996 PP
2Myb_DNA-binding39.11.8e-12240283146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++  eE e++++ +  +G++ W++ a+ ++ gRt++++k++w++
        462875823 240 KGPFDDEEVEKILRMHMAWGNK-WAKMAALLP-GRTDNEIKNYWNT 283
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.208182238IPR017930Myb domain
SuperFamilySSF466891.09E-27184281IPR009057Homeodomain-like
SMARTSM007173.1E-14186236IPR001005SANT/Myb domain
PfamPF002494.8E-15187234IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-22188242IPR009057Homeodomain-like
CDDcd001673.65E-10189234No hitNo description
PROSITE profilePS5129416.72239289IPR017930Myb domain
SMARTSM007174.5E-14239287IPR001005SANT/Myb domain
PfamPF002493.0E-11240283IPR001005SANT/Myb domain
CDDcd001671.63E-9242285No hitNo description
Gene3DG3DSA:1.10.10.602.4E-22243287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-6369386IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MDSGCGMCGK RGDILGAPLS GRIREPTRGH FRFGLPALPT CLLYPLAAAA AATAAALQTP  60
KPSRVSSFPF RRRHLTSPLR RRHYGTNATA TASSPIDPIQ PALPLHVATW SIVRSCEFKS  120
SESEGSVAAP RGRKMMEYYS SLHSPVDGGG DDDYHYDYDE DEEEDNDDEE TDEEGDPRRS  180
GAPPLKKGPW TPEEDKRLRD YVRANGEGNW NQVRINAGLN RCGKSCRLRW SNHLRPDLKK  240
GPFDDEEVEK ILRMHMAWGN KWAKMAALLP GRTDNEIKNY WNTRLKRHQR AGLPIYPEYL  300
VSQASNQDMN FETPEELCGV KRPNESSQGS VLEIHDLMYD YFDHETFIKL MSNGDLPSSS  360
LVDPNGLPLP GRTDNEIKNY WNTRLKRHQR AGLPIYPEYL VSQASNQDMN FETPEELCGV  420
KRPNESSQGS VLEIHDLMYD YFDHETFIKL MSNGDLPSSS LVDPNGLPVD AVNHLKWRIS  480
TDSIASDYSL PFLQIPDESE NAGSSTSFNY GMTENHLAPL GAAIISGHPI FNGNPSTSWT  540
TQRPVKMELP SVQYSNYGHN NAWVCDGPLG SPIEQANTLE SPGSLKSESI SPQNAGLDAI  600
VHMGDDPVSQ SVAYAMRHSF SSAPGDDEID GCPLGVIHSK SPSSSDAIFA EGNCYPDTIF  660
TGKYLPPWTN NGAVDASVEA GAFNELFSMD QSIYNSHIDG DSCEEAEQSN ADCAAVLIDD  720
MLLCDWIALF SIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-281812871106B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMap462875823
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812566.12e-79transcription factor GAMYB-like isoform X2
RefseqXP_025812567.12e-79transcription factor GAMYB-like isoform X3
TrEMBLA0A2T7DWR12e-78A0A2T7DWR1_9POAL; Uncharacterized protein
TrEMBLA0A2T7DWT63e-78A0A2T7DWT6_9POAL; Uncharacterized protein
STRINGPavir.Da00534.1.p2e-79(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129022331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.11e-51myb domain protein 101