PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462875647 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 223aa MW: 25888.2 Da PI: 10.4743 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.7e-15 | 14 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...............TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...............kgRtlkqcksrwqkyl 48 +g+WT+eEde+l++++++ G g+W+t +r g ++R++k+c++rw +yl 462875647 14 KGPWTPEEDEKLLQYIQKNGHGSWRTLPRLAGtgilnrctstaaafrLNRCGKSCRLRWTNYL 76 79***********************************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.1 | 1.8e-17 | 82 | 127 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia +++ gRt++++k++w+++l 462875647 82 RGKFSQEEEQTILHLHSVLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 127 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 5 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.948 | 9 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.41E-29 | 11 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-13 | 13 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 14 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.72E-9 | 16 | 76 | No hit | No description |
PROSITE profile | PS51294 | 26.678 | 77 | 131 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-28 | 80 | 132 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-16 | 81 | 129 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-16 | 82 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.75E-11 | 84 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MGRSPCCDES GLKKGPWTPE EDEKLLQYIQ KNGHGSWRTL PRLAGTGILN RCTSTAAAFR 60 LNRCGKSCRL RWTNYLRPDI KRGKFSQEEE QTILHLHSVL GNKWSAIATH LPGRTDNEIK 120 NFWNTHLKKR LIQMGFDPMT HRPRTDFFAA LPQLIALXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 12 | 131 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462875647 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728309 | 1e-128 | KJ728309.1 Zea mays clone pUT6589 MYB transcription factor (MYB63) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820029.1 | 1e-98 | transcription factor MYB93-like | ||||
Swissprot | Q9S9Z2 | 2e-87 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A3L6RM24 | 5e-98 | A0A3L6RM24_PANMI; Myb-related protein Hv33-like | ||||
STRING | Pavir.Fa00604.1.p | 1e-97 | (Panicum virgatum) | ||||
STRING | OS08T0486300-00 | 4e-97 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1126 | 37 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 9e-90 | myb domain protein 93 |
Publications ? help Back to Top | |||
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