PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462875481

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 464aa MW: 49652.2 Da PI: 9.8729

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462875481	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50	5.3e-16	236	282	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq 462875481 236 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 282 5***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.93E-17	229	286	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-20	229	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.16E-20	230	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.981	232	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-13	236	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-17	238	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009704	Biological Process	de-etiolation
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0010017	Biological Process	red or far-red light signaling pathway
GO:0031539	Biological Process	positive regulation of anthocyanin metabolic process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MHQTANNNRS NGVATSTREQ EPSKESHRMP APATGAEPRA EFTAAKQPRL GGSGEALMNF 60 SLFSRPAAMA RASLQQSVQR PPPPLGTDKA SNVTVTGSTR VESTVVQASS GPRTAPVSAD 120 QRTAWPHAKE VRFACAAAPT TTAGVQQQEL PRDRLGNNMA LQRKVEARKA PEAAVAASSV 180 CSGNGAGIGN DESWRQQKRK SQTECSASQD DDLDDESGGL RRSGSRGTKR SRTAEVHNLS 240 ERRRRDRINE KMRALQELIP NCNKIDKASM LDEAIEYLKT LQLQVQMMSM GGGLCVPPML 300 LPPTMQHLQM PPMAHFPHLG MGLGYGMGVF DMNSTATVPL PPMPGAHFPC SMIPGAAPQG 360 LGIPGRNTLP MFGVPGQAIH PSVPSVQPFP SLASLPPFPS LASLPVRPNL NPQVSATMAN 420 MVQEQQQVAN QQQQSLNNEG TQGANTGDPQ LQTILQVPTN KLQI

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MHQTANNNRS NGVATSTREQ EPSKESHRMP APATGAEPRA EFTAAKQPRL GGSGEALMNF  60
SLFSRPAAMA RASLQQSVQR PPPPLGTDKA SNVTVTGSTR VESTVVQASS GPRTAPVSAD  120
QRTAWPHAKE VRFACAAAPT TTAGVQQQEL PRDRLGNNMA LQRKVEARKA PEAAVAASSV  180
CSGNGAGIGN DESWRQQKRK SQTECSASQD DDLDDESGGL RRSGSRGTKR SRTAEVHNLS  240
ERRRRDRINE KMRALQELIP NCNKIDKASM LDEAIEYLKT LQLQVQMMSM GGGLCVPPML  300
LPPTMQHLQM PPMAHFPHLG MGLGYGMGVF DMNSTATVPL PPMPGAHFPC SMIPGAAPQG  360
LGIPGRNTLP MFGVPGQAIH PSVPSVQPFP SLASLPPFPS LASLPVRPNL NPQVSATMAN  420
MVQEQQQVAN QQQQSLNNEG TQGANTGDPQ LQTILQVPTN KLQI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	240	245	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269\|PubMed:17485859}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00081	ChIP-seq	Transfer from AT1G09530	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462875481

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269\|PubMed:17485859}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022682498.1	0.0	transcription factor APG isoform X2
Swissprot	Q0JNI9	1e-178	PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBL	A0A3L6R267	0.0	A0A3L6R267_PANMI; Transcription factor APG-like isoform X1
STRING	Si000700m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3527	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-35	phytochrome interacting factor 3

Publications ? help Back to Top
Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]