PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462875469 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 345aa MW: 37964.8 Da PI: 5.4109 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.4 | 1.1e-10 | 179 | 235 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s ++GV++++++g+++A+++d + g +rk + g+++ +e+Aa+a++ a++k++g 462875469 179 SSFHGVTRHRWSGKYEAHLWDsSCRvEGrRRKGKQ-GSYDAEEKAARAYDVAALKYWG 235 5799*****************77668776667777.99******************98 PP | |||||||
2 | AP2 | 39.3 | 1.6e-12 | 265 | 312 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 r++ k+grW A+I + + ++lg+f t+eeAa+a++ a+ +++g 462875469 265 YLRRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 312 5689999*******9995.....234************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.37E-14 | 179 | 245 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.48E-17 | 179 | 245 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-13 | 180 | 244 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-22 | 180 | 249 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-7 | 180 | 235 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.517 | 180 | 243 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-5 | 181 | 192 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.988 | 259 | 320 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-6 | 267 | 312 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.91E-19 | 268 | 320 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.3E-16 | 268 | 321 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-21 | 268 | 326 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-14 | 268 | 322 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-5 | 302 | 322 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MEESEVGVNH RKQMEEKDKA AGKSGDEGKM ERSQSINLNR VPAVAKEAGR TQKNGETQSA 60 VVSEANDSST DKAKKCSGAD QTKSPKLEQV DYEGENEGHA ENPVKEASLV TVVGNEGRAD 120 CGDEDGRAQV LSIVKKDEAA DEDGDAINPV TIAGFREDNA VVAASAGVTN VRPAGSRSSS 180 FHGVTRHRWS GKYEAHLWDS SCRVEGRRRK GKQGSYDAEE KAARAYDVAA LKYWGPNTRL 240 NFPVSQYEKE LQDIKDLSQE ECVTYLRRRQ KDGRWQARIG LVAGTRDIYL GTFKTEEEAA 300 EAYDIAAIEI RGKNAVTNFD RSNYMDRGMH CIEGEGLRLL ASKPE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 212 | GRRRKGKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462875469 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957460 | 3e-80 | EU957460.1 Zea mays clone 1593084 protein BABY BOOM 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953856.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | K3YTI5 | 0.0 | K3YTI5_SETIT; Uncharacterized protein | ||||
STRING | Si017580m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11888 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 2e-56 | AINTEGUMENTA-like 5 |